| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3842 |
|---|
| Symbol | |
|---|
| ID | 6205260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4993099 |
|---|
| End bp | 4993782 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641693509 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | YP_001820716 |
|---|
| Protein GI | 182415650 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGC GATTCATCCT GCCAGTGATC GTAGCAACGG CGTTCCACGC GCTCGTTTTC
TTCGGATTCA ATGGTCGGCC TCCCACCGTG GTGCTCCCCG GCAGTGATCC GGAACCGAAA
ATGCCCGCGA TGCCGCAGCC GCCCGTCATC GATGAACTGA TCGAAATCGT CGACCATGCG
ACGTTGCCGG ACCCGATCGA CCAGCCCAAG CGTGCGCGGA AGGGGGACGC CGACGTGGGT
CCGCCGCAGA GGCCGGAGAC GCTGACCGAC GAGAAGGTTC CCTGGGCCAT TCCGTATGAG
CCCGTGAAGC CCGGACCGGT GGGCGACATG AACAGGATTC CGGTGAACAT CGGCGATCCG
AACGGCGATC CGAACAGCGA CGTGACGAAC GCGCCGGTCG ACATGAAATA TCTCGACAAT
CCGCCGCGGC TCCGCGGGCA GATTGCCCCG ATCTATCCGG CGGCCGCGAG GGCGGACGGA
CTGAACGGCC AGGTGGACGT GGAGTTCCTC GTCGACGAGA CCGGTCGCGT GATTCGCGCC
ACGGTTGTGC GCTCGACGGC GGCGATCTTC GAAGAACCCA CGCTCCGGGC GGTTCAGCAA
TGGCGGTTCG AGCCGGGCAA GCGCTTGGGC CGGCCGGTAA AGTTCCGGAT GGTCGCGCCG
GTGGTGTTCA ATCTCTCGGA ATGA
|
|---|
| Protein sequence | MQTRFILPVI VATAFHALVF FGFNGRPPTV VLPGSDPEPK MPAMPQPPVI DELIEIVDHA
TLPDPIDQPK RARKGDADVG PPQRPETLTD EKVPWAIPYE PVKPGPVGDM NRIPVNIGDP
NGDPNSDVTN APVDMKYLDN PPRLRGQIAP IYPAAARADG LNGQVDVEFL VDETGRVIRA
TVVRSTAAIF EEPTLRAVQQ WRFEPGKRLG RPVKFRMVAP VVFNLSE
|
|---|
| |