| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3559 |
|---|
| Symbol | |
|---|
| ID | 6205949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4633045 |
|---|
| End bp | 4634577 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641693227 |
|---|
| Product | xylulokinase |
|---|
| Protein accession | YP_001820436 |
|---|
| Protein GI | 182415370 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | [TIGR01312] D-xylulose kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTCT TCATCGGCAT TGATTCCGGC ACACAGAGTG TCAAAGCGAT CGTCCTCGAT
CTCGAGACCC GCAAGGTCGT GGCGGAGGCG CGCGCGCCTC ACCAGTTGAT CGAAGGGCTG
CCCGTTGGGC ACATGGAGCA GCACCCGGAG GATTGGACCT CCGCGCTCGA CTTCGTGATC
GGCGAGGTGG TGGCGAAGAT CGGGGCCGAG CAGGCGAAGC GCGTGCGCGG GATCGGCGTG
TCCGGCCAGC AGCACGGCTT TGTGCCGCTG GACGAGAACG GCGCAGTCAT CCGGCCGGCG
AAACTCTGGT GCGATACGAG CACGGCGCCG GAATGCGCGA TCATCACGAA AAAACTCGGC
GGGCCGAAGG CGGCGATCAG GAAGACCGGC AATCTGATTC TGCCGGGATT CACCGCGCCG
AAAATCCTCT GGCTGAAGCG CCACGAGCCC GAGAACTACA AGAAGCTCCG GCACGTGCTG
CTGCCGCACG ACTATCTCAA TTTCCACCTC ACCGGGAATT ACTTCATGGA GTTCGGCGAC
GCTTCGGGCA CGGCGATGAT GGACGTGCGG ACGCGCAAGT GGTCGAAGGA CGTGATCGCT
GCGATCGATC GGAAGCTGGC CGACTACCTG CCGCCGATTT CCGAATCGCA TCAAGCCGCA
GGCACGCTGC GCGCGGAGCT GGCGGCGAAA TACGGACTCT CGACTGACGT GGTCGTCAGC
GCCGGCGGTG GCGACAACAT GATGGGCGCG ATCGGCACCG GCAACGTGGC GCCGGGCGTG
GTGACGGCGA GCTTCGGCAC GAGCGGCACG ATTTACGCGT TCGCGAGCAA GCCGGTGATT
GATCCGCAGG GCGAGATCGC GGCGTTCTGC TCGTCGACCG GCGGCTGGCT GCCATTGCTC
TGCACGATGA ATGTCACGAC CGTGACGGAG CAGATCCGCA CGCTGTTCGG GCTCGACGTG
CGCGCGCTCG ACGATTCCGC GGCGAAAGCG CCGGCGGGTG CGAACGGGCT GATCCTGCTG
CCGTATCTGG CCGGCGAGCG CACGCCGAAC GTGCCGGACG GCTCGGGCGT GTTCTTCGGG
TTGAACCAGA AAACCTTCAA CGCAGCGCAC CTGAACCGTG CCGCGATGGA GGGCGTGACC
ATGGGCATGA ACTACGGTCT GCGCCGGCTC GCAACGCTCG GGGTGAAGGC GAAGGAAATT
CGCGTCACGG GCGGCGGCTC GAAGTCGCCG TTCTGGCGGC AGATGATGGC GGACATCTTC
GGCGTGCCGG TGGTCGGCAT GGTCGAGGAT GAAGGCGCGG CGCTTGGCGG CGCGTTGCAG
GCCGCGTGGT GCGTGGCGAT CCGCGACGGC AACAAGAAGG CAAAGCTGAC GGATTTCACC
ACGGGCACGG TGGCGCTGGA CGAGTCGACG CGGTGCACGC CGAACAAGGC GAACGTCGCG
CGTTACCGCG AACTGCAGGC GTTGCAGGAC AAGCTCAGCC TCGCGCTGCG CGAGGTGTTT
GCCGACCAGC GCGCGCTGGC GAACAAGGCC TGA
|
|---|
| Protein sequence | MSLFIGIDSG TQSVKAIVLD LETRKVVAEA RAPHQLIEGL PVGHMEQHPE DWTSALDFVI
GEVVAKIGAE QAKRVRGIGV SGQQHGFVPL DENGAVIRPA KLWCDTSTAP ECAIITKKLG
GPKAAIRKTG NLILPGFTAP KILWLKRHEP ENYKKLRHVL LPHDYLNFHL TGNYFMEFGD
ASGTAMMDVR TRKWSKDVIA AIDRKLADYL PPISESHQAA GTLRAELAAK YGLSTDVVVS
AGGGDNMMGA IGTGNVAPGV VTASFGTSGT IYAFASKPVI DPQGEIAAFC SSTGGWLPLL
CTMNVTTVTE QIRTLFGLDV RALDDSAAKA PAGANGLILL PYLAGERTPN VPDGSGVFFG
LNQKTFNAAH LNRAAMEGVT MGMNYGLRRL ATLGVKAKEI RVTGGGSKSP FWRQMMADIF
GVPVVGMVED EGAALGGALQ AAWCVAIRDG NKKAKLTDFT TGTVALDEST RCTPNKANVA
RYRELQALQD KLSLALREVF ADQRALANKA
|
|---|
| |