| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3209 |
|---|
| Symbol | |
|---|
| ID | 6208812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4179515 |
|---|
| End bp | 4181335 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692876 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001820089 |
|---|
| Protein GI | 182415023 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3693] Beta-1,4-xylanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.818517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.245162 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAC GTCTGTTGCT GTTTGTTTCG CTCGTCGCCA CCGTGCTCGC TCCCTTGAGC
GCGCAGACTT CCTTGCCCGC CGGCGAACCG CTGCTCGGGT CGCCGGGACT CGCGGCGTTT
GGGCTCCAGA CCATGCCCAA CGCCGTCGAC GCGGTGAGCG TGCAGAAAGT GCCCGCGGCC
GCCGCGCCGG GCTTCACCGA AGCCTGGCGC ATCCAGACCC TGCGCGACGT GAACCCGTCG
TTCGCGATTC AGCTTCGCGC CCCGAGCTCG CGCGCGCTCA AGCGCGGTGA CATCGGGTTC
ATCCGCTTCT TTGCTCGCAC CGTGGAAACA GCCGACGAAA GCGGCACGGC GCGGATCAGC
GTCAGCGTGC GTCACGCGAC GCGCCGGGAG ATGGGCTCCA TTGACGAGAG CTTCAACCCG
CCGCGCGAAT GGACCGAATA CCTGCTGCCG TTCCGCAGCG CTCGCGACTA CCCCGCCAAC
GAAGCTGTCG TCGCGCTCAG CTTCGGGTTC AAGCGTCAGG TGATCGAACT CGGCGGGCTC
GAGGCCGTCT TCTACGGCAC GAGCGTGGCG CTAAAGGACC TGCCGCGCAC GCGCTTCACC
TACGCCGGTC GCGAGCCCGA TGCCGCCTGG CGCAAGGCCG CGCTCGCGCG GATCGAGCAG
ATTCGCAAGG GCGACATCGC CGTCCGCGTC GTCGACGCCG CGGGGAAGCC AATTCCCCAC
GCCACCGTTC GGCTCGAGCA AACCCGCAGC GCCTTTCAAT TCGGCACCGC CATCCCGTTC
GCCCGGCTCG TCAACGACAC GCCCGACAAC AAGATCTATC GCGAAAAAGT CCTCGAGCTG
TTCAACGCCG CCAGCCCCGA GAACGACCTG AAATGGGGCG GCTGGCTTGG CGAGTTCGAA
TATGGCACCT ACAGCCAGGC GCAGGCGCTG GGCGGACTGC GCTGGCTGCG TGAACACAAC
ATTCCCGCCC GTGGACACGT GCTCGTCTGG CCGGGTTGGA ACAACCTGCC CAAGCACATC
CGCGCACTCA AAGGCACGCC GCAGCAGAGC GAGATCCCCG CGCTCGTCCG GGAACACATC
ACGGAGATCG GCACCGCGAC CCGTGACTGG CTCGTCGAGT TCGATGTTCT GAACGAGCCG
TACACCAACC ACGATCTGAT GGATCTCTTC GGCCCGGAAA TCATGGTCGA CTGGTTCAAG
ACGGCCCGCG CCGCGATGCC GAAGATCGCG CTCTACTTCA ACGATTTTAG CAACCACGAC
GCGACGACCG ACCGCGAGCA CGTGCAGCAT TTCGAGGACA CCACGCGGTT CCTGCTCGGA
CACGGCGCCC CGGTCGACGG CCTCGGGCTG CAGGCGCACA TCGGCGGCAG GCCCAACGCA
CCGGAAAACG TCCTGGCCGT GCTCGACCGC TATTGGAACG CGTTCAAGCT GCCTGTGCGG
TTCACCGAAT TCGACATCCG CACGAGCGAC GAGGAACTGC AGGCCGACTA CACGCGCGAC
TTCTTCATTC TCGCGTTCAG TCATCCCTCC GTCGTCGGCA TCCAGCTTTG GGGATTCTGG
GAGAAGTCGC ACTGGATTCC CGTCGCGGCG ATGTATCGCG ACGACTGGTC GGAGAAACCA
AACGCCGCCG TCTACAAGTC GCTCGTCCTC GATCAGTGGC GCACGCGCTC CAACGGCACC
ACCGCAGCCG ATGGCACGCT GAAGACGCGC GGGTTCTTCG GCGACTACGT CGTCCATGTC
GACGTCGGCG GTCGCCAGGT TGAGAAGACG TTCACGCTCG CCGCCGGACA ACCGGGCAAA
GTCGAGCTCC AGCTTCCCTG A
|
|---|
| Protein sequence | MSSRLLLFVS LVATVLAPLS AQTSLPAGEP LLGSPGLAAF GLQTMPNAVD AVSVQKVPAA
AAPGFTEAWR IQTLRDVNPS FAIQLRAPSS RALKRGDIGF IRFFARTVET ADESGTARIS
VSVRHATRRE MGSIDESFNP PREWTEYLLP FRSARDYPAN EAVVALSFGF KRQVIELGGL
EAVFYGTSVA LKDLPRTRFT YAGREPDAAW RKAALARIEQ IRKGDIAVRV VDAAGKPIPH
ATVRLEQTRS AFQFGTAIPF ARLVNDTPDN KIYREKVLEL FNAASPENDL KWGGWLGEFE
YGTYSQAQAL GGLRWLREHN IPARGHVLVW PGWNNLPKHI RALKGTPQQS EIPALVREHI
TEIGTATRDW LVEFDVLNEP YTNHDLMDLF GPEIMVDWFK TARAAMPKIA LYFNDFSNHD
ATTDREHVQH FEDTTRFLLG HGAPVDGLGL QAHIGGRPNA PENVLAVLDR YWNAFKLPVR
FTEFDIRTSD EELQADYTRD FFILAFSHPS VVGIQLWGFW EKSHWIPVAA MYRDDWSEKP
NAAVYKSLVL DQWRTRSNGT TAADGTLKTR GFFGDYVVHV DVGGRQVEKT FTLAAGQPGK
VELQLP
|
|---|
| |