| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2990 |
|---|
| Symbol | |
|---|
| ID | 6204264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3840398 |
|---|
| End bp | 3841150 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641692655 |
|---|
| Product | ribonuclease III |
|---|
| Protein accession | YP_001819871 |
|---|
| Protein GI | 182414805 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0571] dsRNA-specific ribonuclease |
|---|
| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.535803 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTTTCCC TGCGTTCGGA AGTCTTGGTG GCAACGCCTG TCCTTCGCGT GTCCGACTCT
CCCTCACCTC TCGCAGCCCT GCAGACCCGG CTGATTTACA CGTTTCGGGA TCCGGCTTTG
CTCGAACGTG CGGTCACGCA CACGTCCTAT CTCCCGGAGA ATCCGGACAT CGCAGAGAGC
AACCAGCGGT TGGAGTTTTT GGGTGACGCC GTGCTGCAGC TCATCCTGAC GGAGGCGCTC
TTCGAACTTT TTCCCGGCGA TCGCGAGGGA CCGTTGAGCC GCCGTCGCGC GGCCCTCACC
AAAGGCGCCT TTCTCGTCGA GCTCGCGCGC GAGTTGCAGC TCGATCGGTG TCTGCTCCTC
GGCTCGAGCG AGGAGGCTTC TGGTGGACGC ACGCGATCGT CTGCCTTGGA AGACGCCTTC
GAAGCTTTGG TGGGCGCGCT TTATCTCGAC AGCGACCTGG CGCTCACGCG CCGGATCGTG
CTCGGGCTGT ACGGCGATCT GCCCAGTCGG CTGTCGGGCG TGGTCAACGA GGAGAATCCG
AAAGGCCGGT TGCAGGAACT CATTCAACCG GAATACGGCA ACCAGGCGCT GCGCTACGAG
GTCACGGGCA TCGAAGGTGA AGATCACGCC CGCGCCTACG AGGTGGCTGT GTTTCTCCAC
GATCGCGTCC TCGGCTCGGG CCGCGGACCG TCGAAAAAAC TCGCCGAAGA GGCCGCCGCG
CGAGTGGCGC TGGAGACGCT GAAGGCGCAG TAA
|
|---|
| Protein sequence | MFSLRSEVLV ATPVLRVSDS PSPLAALQTR LIYTFRDPAL LERAVTHTSY LPENPDIAES
NQRLEFLGDA VLQLILTEAL FELFPGDREG PLSRRRAALT KGAFLVELAR ELQLDRCLLL
GSSEEASGGR TRSSALEDAF EALVGALYLD SDLALTRRIV LGLYGDLPSR LSGVVNEENP
KGRLQELIQP EYGNQALRYE VTGIEGEDHA RAYEVAVFLH DRVLGSGRGP SKKLAEEAAA
RVALETLKAQ
|
|---|
| |