| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2945 |
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| Symbol | |
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| ID | 6207496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 3773689 |
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| End bp | 3777243 |
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| Gene Length | 3555 bp |
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| Protein Length | 1184 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641692610 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001819826 |
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| Protein GI | 182414760 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTTCCC TCATGAATCG TCGCGTTTTC TTCGTGTTGA TCGCTGCTGC CGTCATCGTC
GCGTTCACGT CCGGCTGCCG CCCACGCTCC GCCGCATCCC AGCCTCCCCC CGCCGTCGTC
GAGGCCGTCA ACCGCGGCGT GGCGCTGATG GGCCAATACG ATTACGATGG CGCGACGCAG
GCGTTTGCAG ACGCACTCGC CACTGTGCCC GATCTTGCCG ACGTGAAGGT AAACCTCGCG
ATCGCGCGGT TCAATCGCGG ACGCAAGGAA AGCGCGGACA CTGAACAAGC GACACGGCTG
CTCGAGTCCG TGCTGCAAAA AGAGCCGGCG CATCTCCGCG CGTTGTATTT CAAGGGCATC
ATCCTGCAGC ACCAAGGGCA GGCCGCCGAG GCGCTGCCGT ATTTCGAACA GGTGTTGCAG
CAGCGCCCCC AGGATGGGGT CGCGTGGTAC ATCCTCGGCC TGTGCAAGCA GCGCGTCGGA
CAGGACGCCG AGAAAGAGCT GCTGCGCGCG ATCGAGCTGC GGCCATACCT CGCGAGCGCC
TATTACCGGG TTTGGCAGAC GCTGCAGGCG GCGGGACAGA CTGAGCGCGC CGCGCCTTAC
CTCGAAAAAT TCAAGCGCCT CCGCGAGCAC CCGCTCGCCG AAACCATCGA GCTCCCGCAA
TACAACCAGA TGGGCGAACT CGCGTTGGTC GTTCCGGTCG GTGACACGCC ACCGGCGCCG
CGCGCTCGTG CGCTTTACCG CGCCGGACAC GCACAGGAGA TTCTGGCGCA CGCCAGCCCA
GCATCGGAGT CTGGAGCGAC GTCGGGCGAT CCCTCCGCGA TTTTCGGCGG CGCCGCGATC
CTCCTTCGCC AGCCAGAGGC GGCAGAGATG AAGGGTACTC CGCCGGCGCG AGACGATGGG
GCGGCGACAC CCTCGTCGCC GCCGAACGCG ACGGGGGCGT CGCGTCCCCA ACAATCCACT
GAACGTGGCG CGGCCGCTTC GAAGATTTCG GACAGCCACC GGCAGGCTTA CGTCTTCCTC
GCCGGCTGGC CTGATTCCCG CGCATTGCGG CTCAAGCTTC CTCCTGAAGG AGAGATTCTA
GAGTCACTAA CACCTCCCGA GCTGACGGGT GTCGACGCGC CCCTCACCTG TGCCGTCGGC
GACTACGACA ACGATGAGGT GCCGGATCTG TTCGTCGTCG CCAGCGGCGG CAATGCGCTC
TTCCGTGGCT CGGCCGACGG CGCATTCGTC CGCGTCGCCG ACGCGCTCGC CCCACCCGCT
CGCGGCGGCA CGACTCGCAG CGCGCTCTGG CTCGATGCCG ATCACGACGG CGATCTCGAC
TTATTCGTGT GCAACCAAGG CGCACCGAAT CAGCTCTTCA ACAACAACAG CGACGGCACG
TTCACCGAGA TCGCCGCCAC CGCCGGCGTC GCTGAACCTG AAGGCGATTC ATTGCTCGTC
TTGCCAGGCG ACCTCGATGG CGACCGCGAC ACGGACCTCG TTCTGCTCCG CGCGAGCGCG
CCGCCGAGGC TCTTGCTCAA CGAGCTCACC GGTAAGTTTC GCGCCGCCGA TCTCGGCGGT
CTCGCTATTC GTGGCGATCT CGGCGGCGTG GTGCAGGATT TCAACGGCGA CGGATTGCTC
GACCTGCTCG TGCTCGGCGG CGAGCCCGCC CGGCTGCAGC TCTTCACCGG CGACGGACAC
GCGCATTTTC AGCCGAGCGA GCTGTTCGAT GCGAAGCTGG AAGCGCTCCG CGGTTTCCGC
GTCGCCGATG TCGATCTCGA TGGCGATCTT GATATCGCCG CCTTCGGTCG CGAGGGGCAC
CTGTTGTTGA ACGATGGCGC CGGCCGGTTC GCGCTGCAGC CGCGCGTGTG GACCGCAGCG
ACAGGCGCGG AGATCGCGGG GGTCGAGCTG GCGGATCTGA CCGGCGACCT TGTGCCGGAT
CTTCTGCTGC TTGAGCGCGG CGCAGCTTCG CGCGTGTTGC TCGTGCCGGG GGTGCTGTCG
CCCGCATCCA GCGCGCTGGC CGTCGCGCCC ACCGGCGTTC GTAGCCGCGA CAAACGCACC
CGGAGCCCGG CCAGCGGCTA CGGTGCGACG GTGACCGTCC GCGCCGGGCG GCACGAGCAA
TCGCTGCTCC TCACCGGTCA GGCGGGCGGT TTCTGCCAGT CGCCGCTGCC GCTGACCTTC
GGACTTTCGG GCGCGCCGCG CGCCGACTAC GTGAAGCTGC TCTGGTCCGA CGGCGTCGCG
CAAGTCGAGC AACCGCTCGT CGCCGGCCGC ACTCACGTTG TCGCGGAGAC GCAGCGCAAG
ATCTCGAGCT GTCCGGTGCT CTTCACCTGG AATGGAGAAC GTTTCGAGTT CATCACCGAT
TTCGCGGGCG TCGGCGGCAT GGGCTATCTC GCCGCGCCCG GAGAGTATTC TTTCCCGCAG
CCGATCGACC ACGTGAAAAT TGCGCCGGAA CAGCTGCGCG CGCGCAACGG TTTCTTCGAG
CTGCGGATCA CGGAGCCGAT GGAGGAAAGC GCCTACGTCG ACCGGCTCGA ACTCCTCGCC
ATCGATCATC CGGCCGGCTG GGCGGTTTTC CCCGATGAGC GACTGACGGT GACCGGGCCC
GCGCCCACCC GCGAATTGCT CGCGATCGAG CGGCCGATCT TTCCGGACCG CGCCGTCGGC
CCGGACGGCG CCGATTGCAC GGACCACCTG CGCCGCGCCG ATCGTCGCTA TGCCTTCGAG
CCGGTGCTCG ACCGCCGGTT CTTCGGTTTT TGCGAACGCC ACACCCTCGA ACTCGATTTC
GGCGATCGCC TCGCCGCCGT TTTGCCGGGC GAACGCGTTT GGCTCTTCAT CACGGGCTAT
CTCGAGTACC CCTACTCGCA GACCACCTAC GCGGCTGGCC AGGCCAGCGT GGCGTGGGAA
CCGATTCGCG TGGAGCAGCG ACAACCCGAC GGCTCGTGGC GGACGATCGT GCCGGATGCC
GGCGCGCTCG GCGGCATGTC GCGCACGATG ACAGTGGACC TGACCGGCTT AATCACTTCG
GGCCCCGGCT GCCAGCTCCG GGTGACGTCC AACCTCGAGA TGTTCTACGA CCAGATTTTT
CTGGGAATTC CCGTGCCCCG TGAACGCGTG CACGTGCACG CGCTGCCCGT CGCCGCCGCG
GAACTGCGCT ACGTCGGATT TCCGCGGGAG GTCTCGCCGG ATGGCCGGCT GCCGTTGATC
TACGACTATC AGCAAATCGA GCCGACGGCG CCCTTCCATC AACTGCGCGG CTCTTATACT
CGCTACGGCG ACGTGCGTGA GCTGCTCACG GAGTTCGACG ATCAGTTCGC GTTGATGAAC
TCCGGCGATG AGATTGCCGC GAAGTTCGAC GCCACGCAGC TGCCGCCGCT GCCAACGGGC
ATGACGCGGA GTTTCGTGCT CGTGTCCCAC GCGTACTGTA AGGACATGGA CCTCTACACC
GGCACGCCGC AGACGCTCGA GCCGATGCCG TTCCGCGGAA TGAGCCGCTA TCCGTATCCC
GCCAGCGAGC GGTCACCCGA AACCGACGCG CAGCGCCGGA TTCGTGAAGC CTACCAAACG
CGGGTGGTTC CATGA
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| Protein sequence | MGSLMNRRVF FVLIAAAVIV AFTSGCRPRS AASQPPPAVV EAVNRGVALM GQYDYDGATQ
AFADALATVP DLADVKVNLA IARFNRGRKE SADTEQATRL LESVLQKEPA HLRALYFKGI
ILQHQGQAAE ALPYFEQVLQ QRPQDGVAWY ILGLCKQRVG QDAEKELLRA IELRPYLASA
YYRVWQTLQA AGQTERAAPY LEKFKRLREH PLAETIELPQ YNQMGELALV VPVGDTPPAP
RARALYRAGH AQEILAHASP ASESGATSGD PSAIFGGAAI LLRQPEAAEM KGTPPARDDG
AATPSSPPNA TGASRPQQST ERGAAASKIS DSHRQAYVFL AGWPDSRALR LKLPPEGEIL
ESLTPPELTG VDAPLTCAVG DYDNDEVPDL FVVASGGNAL FRGSADGAFV RVADALAPPA
RGGTTRSALW LDADHDGDLD LFVCNQGAPN QLFNNNSDGT FTEIAATAGV AEPEGDSLLV
LPGDLDGDRD TDLVLLRASA PPRLLLNELT GKFRAADLGG LAIRGDLGGV VQDFNGDGLL
DLLVLGGEPA RLQLFTGDGH AHFQPSELFD AKLEALRGFR VADVDLDGDL DIAAFGREGH
LLLNDGAGRF ALQPRVWTAA TGAEIAGVEL ADLTGDLVPD LLLLERGAAS RVLLVPGVLS
PASSALAVAP TGVRSRDKRT RSPASGYGAT VTVRAGRHEQ SLLLTGQAGG FCQSPLPLTF
GLSGAPRADY VKLLWSDGVA QVEQPLVAGR THVVAETQRK ISSCPVLFTW NGERFEFITD
FAGVGGMGYL AAPGEYSFPQ PIDHVKIAPE QLRARNGFFE LRITEPMEES AYVDRLELLA
IDHPAGWAVF PDERLTVTGP APTRELLAIE RPIFPDRAVG PDGADCTDHL RRADRRYAFE
PVLDRRFFGF CERHTLELDF GDRLAAVLPG ERVWLFITGY LEYPYSQTTY AAGQASVAWE
PIRVEQRQPD GSWRTIVPDA GALGGMSRTM TVDLTGLITS GPGCQLRVTS NLEMFYDQIF
LGIPVPRERV HVHALPVAAA ELRYVGFPRE VSPDGRLPLI YDYQQIEPTA PFHQLRGSYT
RYGDVRELLT EFDDQFALMN SGDEIAAKFD ATQLPPLPTG MTRSFVLVSH AYCKDMDLYT
GTPQTLEPMP FRGMSRYPYP ASERSPETDA QRRIREAYQT RVVP
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