| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2338 |
|---|
| Symbol | |
|---|
| ID | 6207278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 3029540 |
|---|
| End bp | 3030955 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641691993 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_001819220 |
|---|
| Protein GI | 182414154 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.206121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0104866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCC GCTCTCTCGC CAGCTTGCTC TCGATCGCGA TCGCGTCAGC CGTGCCTTTC
GTCGCGCACG GCAAGGAAGC CAAACCCGAT CGGAAGCCGC CTACGCTGGC GATCGATCCG
AGCCCCGTCA CCGCCGGCAA GTCAGCCCTG GTGACGAGCT ATGCGGATAT TCTCGAGCCG
GCGCAGAAAG CGGTGGTCTC GGTTTACTCG ATGAAGATCG TGCGCGAACG CATGGCGCTG
AATCCGTTCC TGCGGCAGTT TTTCGGTAAC GAGATTCCGG ATCAGGAACG CGAGCGCAAG
GAAGAGGGGC TCGGCTCGGG GGTGATCGTT TCGCCCGACG GCTACATTCT CACAAACAAC
CACGTCGTTG AAGGAGCGGA TGAGTTGAAG GTGCTGCTCG CCGACGATCG CGAGTTCATT
GCCAAAGTCA TCGGCGCGGA TCCGAAGACC GACATCGCGG TAATCAAGAT CGAAGGCGAA
CGACTGCCGG TCGTGACGCT GGCCGACAGT GACAACATCC GCGTTGGCGA CGTCGTGTTC
GCGGTCGGGA ATCCGCTCGC GGTCGGGCAG ACGGTCACGA TGGGCATCGT CTCGGCCAAG
GGCCGCAGCG TGGGGATCCT CGACGAGGTC GCCGGCTATG AATCGTTCAT CCAAACCGAC
GCGGCCATCA ATATGGGGAA CTCCGGGGGC GCCTTGGTGG ATGCCAAAGG CCGGCTGGTG
GGAATCAACA GCGCGATCCT GTCGCCCTCG CGCGGCAACA TCGGCATCGG GTTCGCCGTT
CCGGTGAATC TAGCCGCGAC GGTCATGCAC AGCCTCATCG AGACCGGAAC GGTTTCGCGC
GGCTATCTCG GCGTGCAATC GCAGACGCTC GCCGCCGACG AGGCGGAGGC GTTTGGATTG
CCGCGGGACA CGAAGGGTGT GACCATTACC GACGTCACGC CGGACAGCGC GGCGGACAAG
GGCGGGCTGA AGGTGGGTGA CGTCGTCCTC AGCGTGAACG ACAAACCCGT CGCGGCGTTG
CGCGACCTGC GCATCTACAT CGCCCAGACC GCTCCCGGCT CCAAGGTGAA GCTGAAGATT
TCTCGCGACG GCAAACCGCA GGTGCTCGAC ATCGTATTGG GCAAACTGGA CGAGAAACCC
AACGAGTTGC TGACCGGTGT GGAGGTGTCT GCGTTGACGC CGGAGGCTCG ACGCCGGCTG
CGAATTCCGC CGCGGTTCGA CGGGCTGTTG GTGACATCGG TCGATCCTGA ATCGCCGTAT
GCGGACCGAC TGGCGCCTGA CGTCCTGATT TTGCAGGTCG ACCGCGAGGA CGTGAGCGAC
ATTGAAGCTG CGCGGCGTGC GCTGACGCCT GGCCGGCACA TCCTGATTGT TTACTATCGC
GGCTCGGCGC GCGTGATCGG GCTGACAGTG GAATAG
|
|---|
| Protein sequence | MKFRSLASLL SIAIASAVPF VAHGKEAKPD RKPPTLAIDP SPVTAGKSAL VTSYADILEP
AQKAVVSVYS MKIVRERMAL NPFLRQFFGN EIPDQERERK EEGLGSGVIV SPDGYILTNN
HVVEGADELK VLLADDREFI AKVIGADPKT DIAVIKIEGE RLPVVTLADS DNIRVGDVVF
AVGNPLAVGQ TVTMGIVSAK GRSVGILDEV AGYESFIQTD AAINMGNSGG ALVDAKGRLV
GINSAILSPS RGNIGIGFAV PVNLAATVMH SLIETGTVSR GYLGVQSQTL AADEAEAFGL
PRDTKGVTIT DVTPDSAADK GGLKVGDVVL SVNDKPVAAL RDLRIYIAQT APGSKVKLKI
SRDGKPQVLD IVLGKLDEKP NELLTGVEVS ALTPEARRRL RIPPRFDGLL VTSVDPESPY
ADRLAPDVLI LQVDREDVSD IEAARRALTP GRHILIVYYR GSARVIGLTV E
|
|---|
| |