Gene Oter_2258 details

Gene Information

• Locus tag: Oter_2258
• ID: 6207677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Opitutus terrae PB90-1
• Kingdom: Bacteria
• Replicon accession: NC_010571
• Strand: -
• Start bp: 2910883
• End bp: 2914191
• Gene Length: 3309 bp
• Protein Length: 1102 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 641691914
• Product: xylan 1,4-beta-xylosidase
• Protein accession: YP_001819141
• Protein GI: 182414075
• COG category: [S] Function unknown
• COG ID: [COG1470] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.219101
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 5
• Fosmid unclonability p-value: 0.0256212
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGACTA AAGCTGGTTT TGCTGTGTTG CTCGTCGCCG CGATCGCGCT GCCGGTCGCC 
ACGTTGATGT TCGCCGCCCA AGCGGCCCGA GGCGCCAAGG GCGCTCCGCC CCGACCGCAA 
GGTCCGTGCG ACGTCTACGC CGCCGCGGGC GCTCCGTGCG TCGGCGCGCA CAGCTCCACG 
CGCGCGCTCT ACGCCTCTTA CAACGGACCG CTCTATCAGG TGATGCGCCA GTCGGACGGC 
AAGACGCTCG ACATCGGCGT CGTCCAGCCT TCCGCCAACG ACGCGGGCGG CTACGCCGAC 
GCGGCCGCGC AGGACGCGTT TTGTGCCAAC ACTTATTGCT GGATCACCAC ACTCTATGAC 
CAGTCCGGTC AGGGCAACGA TCTCACCCAG GCGCCCCGCG GCGGGTTCAG CGGGCCCGCG 
ATGGGCGGAT TCAACAATCT TCCGATCGCC GACATGGCGC CCGTCACGGT CATGGGCCAC 
AAGGTCTACG GCGTCTTCAT CGCGCCGGGC ATGGGCCTGC GCAACAACAA CCCCAAGGGC 
ACCGCGGTCG ACGACCAGGC CGAGGGTCAA TACTGGGTGA TCGACGGTCA CCATTTCAAC 
AGCGGCTGCT GCTTCGACTA CGGCAACGCC GAGACCGACA GCCGCGACGA CGGCAACGGC 
ACGATGGAAA CCACCTACTA CGGCACGGCG AACGTGTGGT ATCACGGCCA TCCGCCCGGC 
CCGTGGATCA TGACCGACCA GGAGAACAAT CTCGTCGGTT GCGTGAATCC CGACGGCTCC 
AAGCTCTGCG TCGGACTGCC CAGCATCGAC TGGCGTTTCG TTACCGCGAT CGCCAAGGGC 
GAGCCGCACC ACTGGACCTC TCTCGGCGGC GACGCGCAGC GCGGCGAATT GGCCGTCATG 
TTCGACGGCC CGCGCATCAA CGCCACCTAC GACCCGATGC GCAAGCAAGG CGCCATCCTC 
CTCGGCAACG GCGGCGACAA CAGCGTCGGC TCTCAGGGCA CGTTCTACGA AGGCGCGATG 
ACTGCGGCCG GCACGTTCCC GAGCGACGCG ACCGACCAAC TCGTCCAGGC CAACGTCGTC 
GTCGCCGGCT ACAATCTACC TCCGCTCACC ATCGCGCCCG CATCGGCGAC CCCCCGGCCA 
CCGGGACTCC AGACGTTCAC CCCGCGGTCC TCGCAGGAGA CCGTCGTAAC CTTCACCAAC 
ACCGGCACGG CGCCCGCGAC CGATGTCCGG CTGAGCCTCG ACGTGCCGTC GGGCTGGACC 
GCCGCCTTCA CGGGCGGCAA AGGCGCCGCG GCGACGATCG CCGGGCCGGT GGGGCCCGGC 
GCCAGCGTAA GCGCGACGTT CAAGGTCACC TCGCCGCGCG CCGCTTTCAA CGGCGATCTC 
GTCGCGCGCG CGGCGTGGAC CGACTCCGCC ACGGGCACGG CGAAATCCGA CGCGCGAGCC 
GAGAAGGTGC GCAACGTCAG CCCCGTTAAG CTGAACGAAT TTCGGATCAG CACCGGCTCG 
CCGTTCAACC CGACGGACTC GTTCATCGAG CTCTACAACC CGGGCGACGA TGCCATCGAC 
GTCTCCAACT GGACGCTGAC TCACCACCCC GCCGAGGAGC CGATCTTCTC GTCGGTGCAG 
ATTCCCGCCG GCACCAAGCT CGCCCCGAAG GCGTTCTACC TGCTCGGGCT CGCCAATTCC 
GGCCTGGCGG TTCCTGCGCG CAAGGGCGAC ACCACGCTCT ACGTTCGGAG CACTGACGGC 
ATGAAGGTGG GCGACACGAT CGAGATCGAC ACCGGCTCCG GCAGGGAGGC GCGCAAGATC 
GCGCAACTCG GCACCGCGGC CAGCGCCGCC ACCACGTTGT GGCAACCGCT GCCCGAAGGT 
CCGGTGATCA CGATTCCGGC CGGCTCCACC AATGTCCCGG TCACGCACCT GTCCGGCTTC 
GCCGTCGGCG AAAAGATCGC GCTCGGCTAC GGCACCACGA CCCCCGCCGT CGCCAACAAC 
GTGGAGCGCT ACGAGGTCGT CACTGTCACC GCGGTCGGCA AACCCGGCAC GCAGGCCTGG 
CTCTCGATGG ACGCGAAGGC CGGCGACACC AACATCAAGG TTTCCTCCGT CGAAAACATC 
TCCGTCGGCG ACCAGATCCG GCTGGATATC GACACCATGG GCCACGGCAT CGAGACCGTC 
ACGGTCACCC GCGTCGGCAC GGCGTCGGTT CGCAACACCT TCCGCGGCCC CTTGAACGCC 
GATGAAGATC CCGGCACGGG GCTCGACCTC GCCGCTCCGC TGAAGTTCGA CCATGCGTCC 
AACATGCCCT TCAGCGTCCG CGGCACGGGC ATCAGCTTCG AGCCGGCGAC CGCGTTCGCG 
CACGCGAGCA ACGAGCCCGT TCAGGCGCTC GGCACCGGCA TCACGCTCGA TCAACCGCTC 
GCACGCGATC ACGCGATCAA CGCCGCCGTC CGCGACGCGC AGGTCACGAC CGCCGGTTAC 
CAGGGCCAGC AAGCGCCCGA TCAATGGTTC GGTGGCCCGG CGCTCTTCGC GGCGGAGCAG 
ACCCGGCCGG GCCGCACGGT TTTCGCCGGC GCCATGATCC TGCGCGACGG CGCCGGGCTC 
GTCGTCGACA GCCTCAACTA CGGGCTGATC GTCGATCCGT GGGCCGCCGA GGGATACCAG 
GCCGGCGGCG GGCCCGCCGA GAGCGGCAGC GTCACGCCGA CGCCCACGCG GTTCCGTCCG 
ATGTGGGTGC CCGCGGGCGC CGACGATCCG AGCAACCGCA GCGTCGGCCG CTTCCCTGAC 
GGCGTCGACA CCGACAGCAA TCGCGCCGAT TTCCTCATTC AACCTGCCAC GTCGCTCGCG 
TCCGGATCCG CGGCCGGCAC AGCCAACATC AAGGTCGAAA GCGTGAGGGA ATTCAGTCGC 
GGCCAGACGA TCACGATCGA TGTCGGCCCG AACCAGGAGG CCGCGGTCAT TTCGACCGTG 
GGTACGTCCG GCGGCACTGC CATGGGTTCC GCAAGCACGT TCGGCGCGAC GGAGCTGGTG 
GTCGGTGATA TCAGCGGGTT CAGCACCGGC CAGACGATCG CCATCGATCG CGGGGCGAAC 
TTCGAGACGG CGATCGTCGC CTCAACTAAC CGCGGTTTCC CCGTCGGATT CCGCGGCGGG 
CCGGGCCGTC CCGCCACGAT CACGGTGACG ACCCCGCTGC GGTTCGCGCA CGCCGCCGAG 
GCCGCCGTCG CCGGCACCGG GATCACGCTC ACCACCGCGC TCACTCGCGC GCACGCCAGC 
GGCGTGCCGA TCGGCAGCGA TCTCCCCACG CCCGGTGCAC CGAACCGGTA CTATCGAGAT 
TTAAAGTAA 

 

Protein sequence

MKTKAGFAVL LVAAIALPVA TLMFAAQAAR GAKGAPPRPQ GPCDVYAAAG APCVGAHSST 
RALYASYNGP LYQVMRQSDG KTLDIGVVQP SANDAGGYAD AAAQDAFCAN TYCWITTLYD 
QSGQGNDLTQ APRGGFSGPA MGGFNNLPIA DMAPVTVMGH KVYGVFIAPG MGLRNNNPKG 
TAVDDQAEGQ YWVIDGHHFN SGCCFDYGNA ETDSRDDGNG TMETTYYGTA NVWYHGHPPG 
PWIMTDQENN LVGCVNPDGS KLCVGLPSID WRFVTAIAKG EPHHWTSLGG DAQRGELAVM 
FDGPRINATY DPMRKQGAIL LGNGGDNSVG SQGTFYEGAM TAAGTFPSDA TDQLVQANVV 
VAGYNLPPLT IAPASATPRP PGLQTFTPRS SQETVVTFTN TGTAPATDVR LSLDVPSGWT 
AAFTGGKGAA ATIAGPVGPG ASVSATFKVT SPRAAFNGDL VARAAWTDSA TGTAKSDARA 
EKVRNVSPVK LNEFRISTGS PFNPTDSFIE LYNPGDDAID VSNWTLTHHP AEEPIFSSVQ 
IPAGTKLAPK AFYLLGLANS GLAVPARKGD TTLYVRSTDG MKVGDTIEID TGSGREARKI 
AQLGTAASAA TTLWQPLPEG PVITIPAGST NVPVTHLSGF AVGEKIALGY GTTTPAVANN 
VERYEVVTVT AVGKPGTQAW LSMDAKAGDT NIKVSSVENI SVGDQIRLDI DTMGHGIETV 
TVTRVGTASV RNTFRGPLNA DEDPGTGLDL AAPLKFDHAS NMPFSVRGTG ISFEPATAFA 
HASNEPVQAL GTGITLDQPL ARDHAINAAV RDAQVTTAGY QGQQAPDQWF GGPALFAAEQ 
TRPGRTVFAG AMILRDGAGL VVDSLNYGLI VDPWAAEGYQ AGGGPAESGS VTPTPTRFRP 
MWVPAGADDP SNRSVGRFPD GVDTDSNRAD FLIQPATSLA SGSAAGTANI KVESVREFSR 
GQTITIDVGP NQEAAVISTV GTSGGTAMGS ASTFGATELV VGDISGFSTG QTIAIDRGAN 
FETAIVASTN RGFPVGFRGG PGRPATITVT TPLRFAHAAE AAVAGTGITL TTALTRAHAS 
GVPIGSDLPT PGAPNRYYRD LK