| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2162 |
|---|
| Symbol | |
|---|
| ID | 6205026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 2774184 |
|---|
| End bp | 2775203 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641691815 |
|---|
| Product | D-alanine--D-alanine ligase domain-containing protein |
|---|
| Protein accession | YP_001819045 |
|---|
| Protein GI | 182413979 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.856856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.227534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGAA AACTAAAAGT GCTGGCGCTG TTCGACGTCG GCGAGCCGAC GCGAGCCGAC
GAGGATCTTG GGGCGACGCT GCAGACGCCG GAGTGGAAGA CCGAGGCGGG CGTGCTCGCC
GCGCTCAACG AGCTCGGTTA TCCCAATGAG CATCTCGCGA TCTTCGACGA CCTGGAGCCG
CTGCGGCAAA AGGTGCAGGC GTTTCAGCCG GACGTCGTCT TCAACCTGGC GGATCAGTTT
CGGAACAACC GGGCGTTCGA CCAGCACATC GTCTCGTTTC TGGCGATGAG CGATATTCCG
TTCACGGGCT GCGGCTCGAC GGGACTCACG CTCTGCAAGC ACAAGGGCGT TTCGAAAAAA
ATCCTGAGCT ACCATCGGAT CCACACGCCC GCGTTCGCGA TCATTCCGCG CGGCCGGCGC
GCGGTGCGGC CGAAGCGGCT GAAGTTTCCG ATCCTGGTGA AGCCGCTGAA GGAGGAGGCG
TCGTATGGCA TCGCGCAGGC GTCGTTCGTC GAGACGGACG AGCAGTTCCG CGAGCGCGTC
GAATTTGTCC ACCAGAAGTT CAACAACGAC GCGATCGCCG AGGAATACAT CGAGGGGCGG
GAACTCTACG TGAGCCTTCT GGGCAATCAC CGGCTGCAGG TATTTCCGAT CCGCGAGCTG
GTGTTTCGCG AGGTGCCGCC GGATGAGCCG AAGATCGCCA CGTACAAGGC GAAGTGGGAC
GAGGCGTATC GGGCGCGCTG GGGATTGGAG AACCGCTTCG TGGAGGATCT CGAGCCGGCG
TTGGTGCGGA AGATCGAGGC GACGTGCCGG CGGATCTACC GGCTGCTGAC GATCGACGGT
TATGCGCGGT TGGATTTGCG GCTGAACGCA CGGAACGAAC TTTGGTTCAT CGAGGCGAAC
GCGAACCCGA TCCTGGCGCC GGACGAAGAC TTCGCGCTCT CGGCGGGGAA GGCGGGGTTG
AGCTATCCGC AGCTGATCGA CCGGATCGCG CGGCTCGGCT TGAGCGCGGT GCGGGAGTGA
|
|---|
| Protein sequence | MRRKLKVLAL FDVGEPTRAD EDLGATLQTP EWKTEAGVLA ALNELGYPNE HLAIFDDLEP
LRQKVQAFQP DVVFNLADQF RNNRAFDQHI VSFLAMSDIP FTGCGSTGLT LCKHKGVSKK
ILSYHRIHTP AFAIIPRGRR AVRPKRLKFP ILVKPLKEEA SYGIAQASFV ETDEQFRERV
EFVHQKFNND AIAEEYIEGR ELYVSLLGNH RLQVFPIREL VFREVPPDEP KIATYKAKWD
EAYRARWGLE NRFVEDLEPA LVRKIEATCR RIYRLLTIDG YARLDLRLNA RNELWFIEAN
ANPILAPDED FALSAGKAGL SYPQLIDRIA RLGLSAVRE
|
|---|
| |