Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_1845 |
Symbol | |
ID | 6205288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 2292703 |
End bp | 2295072 |
Gene Length | 2370 bp |
Protein Length | 789 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641691493 |
Product | WD40 domain-containing protein |
Protein accession | YP_001818728 |
Protein GI | 182413662 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.418755 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCCGC CTCCTTCTCA CCTGCGCCTG CACCTCACGC TCTGGTCCGT CGGCATGTTC ACCGCGGCGT CAGCGGCCGT CACACCGCCG CCCGATCTCA CGGCACCAGC GCGTCCTTTC GCCGAGGGAA TCATTTCCAC TCCGGAGAGT TTCGGCGCAA GCTTCAGCCC GGACGGCAGA ACCTTTTATT TCGCCCGCGC GCTGCCGCCC CGCGGTCTGC CGACGATCCT GTGTTCCCAC CTGTGCGATG GGCAGTGGAC CGAGCCGGAA ATCGTCCCGA TTGACGGGGC ATCCGGCGAA GGCGACGCGT CGCTGTCCCC GGACGGCGCG CGGCTGTTCT TCTGGTCCCG GCGAACTGCG CCCGGCAAGC CCGCCGGCTC GCGCCCGATT CCTGATCTTT GGTTCGCCGA ACAACGCGAC GGCAGGTTCG GGCCCGCCCA TTCCGTCGGC GAAACGGATA CCGCGGCCTG GACGCCGCTC TCGCTGCGCT TTGGCGGTCC GTCCGTCGCG GCCGACGGCA CGCTCTACGC CTTTCGCGGT GCGGCCGCGA CAGGCGGTCC GCCGCGGCTC GTTCGGGCGC CACTCGTCAG CGGACGCTAT CTCGCATTTG AGGATCTCGG CGAAGGGCTC AACGCCAACG GCGGCGGGTT CGACCCCTAC GTTGCTCCGG ACCAGCACTA CCTGGTGTTC TCCAGCGATC GCGCCGATTC CCACGGCAAC GCCGACCTCT ATCTCAGCCT GCGCGCCGCC GACGGAAGCT GGTCGATCCC ACGGAATCTC GGACCGGCGG TGAATTCCGA CGCAGCGGAA TACGAACCCG CCATCTCACC CGACGGCCGA CTGCTCGTGT TCACGCGCGA GCGCCTTGGC ATCTTCGTCA TCGAAGTCCG CGCGCTCGGG CTGGATCTTT CGCCGGAAGC AAACAAAGCT GCGCGCGATG TGAGTCCGCG TGCGAAGGCG GTGGGAAATG ACACGCCGGC TACGCTGCGG GCAGAGCTGG TGGGCGCCGC CGCGTGCGCG GGGGTGCGGC CGCCCCCGGA AGCCACCCTG TTCGAGGAGG GGCTGATCTC CACGCCCGAC TCTTTCGCCG CGACGTTCAC GCCTGATGGG GCCACGCTCT ACTTCTGTCG TTCCTCAGGT GTTCGCCCCG ATCGTCGAAG CAGGATCATG GAATCGCACT ATGCCGATGG CCGCTGGAGT GTGCCGCAGC CGGTGCCGTT CTCGGGCGAA TTCAACGATT TTGACCCGAA CCTCTCGCCG GACGGCGAGC AGCTCTTCTT CGCCTCCGTG CGACCAGAAA GCGGGCCGCG TCCCGCGCTT TGGGTCGTCG AACGCACCGC CGCCGGCTGG AGCGCCGCCC GCAGCCTCGG CACCATCGCC GGCATGGACG GGGTGACCGT GTTCCCCTGT CCGACCGCGA GCGGCAATCT CTACTTCGCC GGACATGCGA CCGGATTGGC GTCGCACGGC GATGATGATA TTTACGTGTG CCGACGACAC TCGGACGGCC GCTACGGCCC GCCCGAGAAT CTCGGGCCTG CGGTCAATTC GCCGTTTCAG GACTACGACG GCTACGTCGC GCCGAACGAG AGTTTCATCA TCTTCTGCAG CCGGCGCCCG GGCGGGATCG GCCCGAGCGA TTTCTATGTC AGCACGCGCG AAAACGGCGG CTGGAGCGCC GCGCGTAATC TGGGGCCGCT GATCAACTCG GCGAGCGTTC GCGGCGTCTG CTGTCCATCG GTTTCCCCTG ATCGGCGCTG GTTCTACTTC ACCAGCAGCC GCAACGAACG ACCGGGCATC TACCGAATCG AGTTCAAAGC GCTCGGGCTG GCCTCGCGCG CGAGTGCGGC TGCGCCTGCC GCTCCCGCGC CGCGATCGGC AGGCGGGCAG GCTGCTCCCG CCCCCGAGCT GTTCGGAGGC GGCGCCGTCA AAGCAGCAGC CCGACGTTTT CTCCGGACGG CGCAACCGTG TTCACGCACC TCTACAGCGA CACGGAGAAA AAGCACACGA TCTTGGTTTC GCATTGGCGC GAGGGCCGAT GGACGCCGTC CGAGATCGCG CCATTCTCGG GGGTGCACGA CGAGATGGAG CCTGCGTTCA GTGCGGACGG AAAACGGCTG GTGTTCGCTT CGTACCGGCC GGTGGCGGGA GCGCTCGACG CGATGCGACT CTGGTGCGTG GAACCCACGG ACACCGGCTG GAGCGAGCCC CGATTGCTGC CGATCGCGGA AGCTGGCGAT GGAGCGCGTT CTGGAGCGCC CTCGCTCGCG CGCGATGGCG CGCTGTATTT CGGTCATTTG CGCGACCGTG GCTGGCCATG GGAGATCTAC TGCGCCCGAT ACGAAAACGG CCGCTACGGC GAGCCGATGA
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Protein sequence | MKPPPSHLRL HLTLWSVGMF TAASAAVTPP PDLTAPARPF AEGIISTPES FGASFSPDGR TFYFARALPP RGLPTILCSH LCDGQWTEPE IVPIDGASGE GDASLSPDGA RLFFWSRRTA PGKPAGSRPI PDLWFAEQRD GRFGPAHSVG ETDTAAWTPL SLRFGGPSVA ADGTLYAFRG AAATGGPPRL VRAPLVSGRY LAFEDLGEGL NANGGGFDPY VAPDQHYLVF SSDRADSHGN ADLYLSLRAA DGSWSIPRNL GPAVNSDAAE YEPAISPDGR LLVFTRERLG IFVIEVRALG LDLSPEANKA ARDVSPRAKA VGNDTPATLR AELVGAAACA GVRPPPEATL FEEGLISTPD SFAATFTPDG ATLYFCRSSG VRPDRRSRIM ESHYADGRWS VPQPVPFSGE FNDFDPNLSP DGEQLFFASV RPESGPRPAL WVVERTAAGW SAARSLGTIA GMDGVTVFPC PTASGNLYFA GHATGLASHG DDDIYVCRRH SDGRYGPPEN LGPAVNSPFQ DYDGYVAPNE SFIIFCSRRP GGIGPSDFYV STRENGGWSA ARNLGPLINS ASVRGVCCPS VSPDRRWFYF TSSRNERPGI YRIEFKALGL ASRASAAAPA APAPRSAGGQ AAPAPELFGG GAVKAAARRF LRTAQPCSRT STATRRKSTR SWFRIGARAD GRRPRSRHSR GCTTRWSLRS VRTENGWCSL RTGRWRERST RCDSGAWNPR TPAGASPDCC RSRKLAMERV LERPRSRAMA RCISVICATV AGHGRSTAPD TKTAATASR
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