| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1790 |
|---|
| Symbol | |
|---|
| ID | 6205934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 2214930 |
|---|
| End bp | 2215682 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691439 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_001818674 |
|---|
| Protein GI | 182413608 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCCCA AAGAACTCAC GATCTGCGGA CTGGCGGCGG TGCGGGCGCA ATTCGCGGCC
GATCCCGGCG CGATCAAACG GCTTTACTTC GACTATGCGA CCGGCCGCCG GATCGGCGTG
ATCTGCCGCA CCCTCGCGCA ACGGAAGAAA ATCTACCGCT GTGTCGAACC GGCCGAACTC
GAGAAAGTCG GGGGCACCCT TCACCACGGC GGAATCGTCG CGGTTGTCGA GGCGCCCGAA
ATGCGCGAAC CGGCGGCGGC CGACCTGACC GCGTGGGTGA AGCGCTGCGA GCCGCTGTTG
GTGCTGGATC GGATCGGCAA CGCGCACAAC CTCGGCGCGA TCGCGCGCAC CGCGGCATTT
TTCGGACTGC CTCGGCTGAT CCTGCCGCGT GATCCGGCTG CAGCACAGCC GAGCGAAGCG
GCGTACCGCG TGGCGGAGGG CGGCATGACG CACCTCGAAC TCGCGCGGGT GGACGATCTG
CCGGCGTTTC TCCGCAGTCT GGTGGCCGCC GGCTATGACG TGATCGGCGC CGCGACGCGC
GGAGGATTGC CCCAGGCGCA GTCGCACACC GGAAAACCGA TCGCGCTGGT GCTGGGCAAC
GAAGAACACG GGCTGTCCGC GGAGGTCGCC GCCGCATGCA CCCGGCTCGT GACGATCCCG
GGCAGCGGGA AGGTCGAGTC GCTCAACGTT TCCGTCGCGG GCGCGGTGTT GATTTGGGAA
TTGCTGGTGC GCGCTCCGCG CGGCACGCGC TGA
|
|---|
| Protein sequence | MKPKELTICG LAAVRAQFAA DPGAIKRLYF DYATGRRIGV ICRTLAQRKK IYRCVEPAEL
EKVGGTLHHG GIVAVVEAPE MREPAAADLT AWVKRCEPLL VLDRIGNAHN LGAIARTAAF
FGLPRLILPR DPAAAQPSEA AYRVAEGGMT HLELARVDDL PAFLRSLVAA GYDVIGAATR
GGLPQAQSHT GKPIALVLGN EEHGLSAEVA AACTRLVTIP GSGKVESLNV SVAGAVLIWE
LLVRAPRGTR
|
|---|
| |