| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1192 |
|---|
| Symbol | |
|---|
| ID | 6205852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1487111 |
|---|
| End bp | 1488274 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641690834 |
|---|
| Product | endoribonuclease L-PSP |
|---|
| Protein accession | YP_001818078 |
|---|
| Protein GI | 182413012 |
|---|
| COG category | [E] Amino acid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family
[COG1834] N-Dimethylarginine dimethylaminohydrolase |
|---|
| TIGRFAM ID | [TIGR00004] endoribonuclease L-PSP, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGT TCCTGAGAGA ACCCGGGCCG CAGTTCGGAG TGCGCGACTT TCGCGCGCCG
ATTGATCTGA AATTGCTCCG GAAACAGCAC TCGCAGCTCG TCGCGATCCT CAAGGAATTG
GGCGCGCAGG TTAAGCTGAT CCCAGCGTCG CCGGATCAAC CCGATGGCGT GTCTGTCGAC
CATGCCGCCG TCGTCCTGCC GGAGGTGGCG GTGATCACGC AGCCGCGCGG GCTCTCCCGC
GAGTCGGAGG TCGAAACCAT TGCCACGGCG TTGGCCAACC ACCGGCCGAT CGTGCGGATT
GTCGCGCCGG CATGCCTGGA CGGTCGCGAT GTCGTGCGGA TCGGACGCAC GCTTTTCGCC
GGCATTTCGC GCCACACCAG CGCGGAAGGC ATCGCCGAAT TCGCCGGAAC TATCGAACCC
TACGGCTACG AGGTGCGGAC GGTCGAAGTC CACGGGTGCG CTCATCTCAA GTTCGCCTGC
ACCTTCGTCC CGCCCCATTT CCTGGTGGCG AATACCTCAT GGGTGGATGG CAACACCTTC
GGAGATCTGG TTCTGATCCC GGTCGATGAA GGCGAGCCCT TCGCCGCCAA CACGCTCACG
GTCGCTGGCA CGACGCTGGT GAGCGAGGCG TTTCCGAAAA CGGAGCAACG TCTCCGGGAT
GCCGGCATCG TGACGCGGGG CGTACAGGTG TCCGAGTTTC ACAAGGCTGA AGCAGGGCTG
ACGGGCCTCT GCCTGATCTT GGAGCCGCGC AGCGTGCGTC CCGCGAACGC GCCGGTGGGC
CTCAGATTCG TGCGGGCGCC GCGTGCGTCG GCGAACAACG GCCATTTTGC CCAGGCCGTC
GTCCACGCGG GAATTGTGTA TGTCGCGGGT CAGTTGCCCA TCGATCCAAA AACAGGCCGG
CCCGTGGAGG GCGCAGCCGA GCAACAAACC GAGCAAGCCC TGCGCAATGT GGCCACGGTT
CTCACCGAAT CGGGCAGTTC GCTCGCGCGC GTGCTACGCG TGACGCTTTA TGTTTCCGAC
CTCAAAACAT TGGACGGCGT GAACGCCGCT TGCGCCCGAG TTTTCGCGGG ACACCGGCCG
GCGCAATTCG TGGTCCCGAC GAAACCCTTG CAGCAGGGTT GTCTCGTCGC GGCGGAGGTC
ATCGCCGCCG TTGCAGCTGA GTAG
|
|---|
| Protein sequence | MIAFLREPGP QFGVRDFRAP IDLKLLRKQH SQLVAILKEL GAQVKLIPAS PDQPDGVSVD
HAAVVLPEVA VITQPRGLSR ESEVETIATA LANHRPIVRI VAPACLDGRD VVRIGRTLFA
GISRHTSAEG IAEFAGTIEP YGYEVRTVEV HGCAHLKFAC TFVPPHFLVA NTSWVDGNTF
GDLVLIPVDE GEPFAANTLT VAGTTLVSEA FPKTEQRLRD AGIVTRGVQV SEFHKAEAGL
TGLCLILEPR SVRPANAPVG LRFVRAPRAS ANNGHFAQAV VHAGIVYVAG QLPIDPKTGR
PVEGAAEQQT EQALRNVATV LTESGSSLAR VLRVTLYVSD LKTLDGVNAA CARVFAGHRP
AQFVVPTKPL QQGCLVAAEV IAAVAAE
|
|---|
| |