| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1125 |
|---|
| Symbol | |
|---|
| ID | 6206277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1399053 |
|---|
| End bp | 1401956 |
|---|
| Gene Length | 2904 bp |
|---|
| Protein Length | 967 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641690768 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_001818013 |
|---|
| Protein GI | 182412947 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.304926 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC ACACCCCTCG CAAGTTCCTG CCGGCGCTCT TCCTTGCACC GGCGATTGCC
CTGTCTCTAT CCGCCCAGGA AGCCGCGCCC GCTCCGGGCG AGCCCGCTTC CGCGCAGGCC
GTCGGCGCCG ACCAACCCAT CGTGCTCGAG CGCTTCACCG TCGATGTCAC CCGTGACCAA
GGTTACGTCG CGGTCGACTC GCTGGCGGGC GGCCGCACCA ACACGCCGAT CCGGTTGACG
CCGGCGGCGA TGTCGTCGGT CACCCGAGCG TTCATCGACG ATCTCGGGAT CCGCGACGTG
CGCGAGGCAT TGCGCTGGGC GCCGAACGTC CTGCCCGAGG ATCCGCTCGC CGGCCGCGGT
TTCGGCGGAC AGGCGTTTCA GCCGTGGGCG TTCAACTTCC GCGGCGTCGG CGCGGGCCAG
CAGGGCGGGG CGGGTCCGAC GCGAAACTAC TTCACGTTTT TCGAGAACGC CGACGCCTAC
AACATCGAGC GCGTCGAGTT CACCCGCGGG CCCAACGGCA TCCTGTTCGG GCTCGGCACC
GTCGGCGGCA CGCTGTCGAC CTACACGAAA GTACCGCGAC TCGACAAAAC GTTCATCAGC
CCGGCGGTGA TCGCGGACGA CAACGGCGGC TTGCGCTTCG AGTTGGATTA CAATCTCGCG
GCGAACGACC AGCTGGCGAT CCGGCTCAAC GCGCTGCACG ACGACGGCCG CGGCTGGCGC
AACGGCGACG ACAGTCAGAA GCGCGCGATC GACCTCGCGT TTCTCTACAA GCTCAGTGAT
CGCACGACGC TGCGGCTCGA GATCGAGGGC TTCCGGTCCA CGCAGACGCT CATCTCTTCG
ACCATTGGCG ACAAGGCCTC CGGCTGGGAC GGCCAGACGG CCTCGGAAAC CTGGGGCGCG
CTTCCGATCG GCAGCGCGCG CACGGTGAAG ATTTCCGCGG CCGGCGGCTG GGGTGACTGG
CTGAACGCGT TTCCCGTCTA CACGCCCGGA CTCGGCAAGG GCCTGATGTT GTGGGCGCCA
TGGACCAACG ATCCCGATCC CGCCAACCCG GCCCAGACCG TGCGCACGTA TCACGGCGGC
TACGCGTCGA CGAGCAGTCT GCTCGATCCC GGTCAGGCGC TGATCTGGGC GCCCTATAAG
GGGTGGTATC CCGACCAGAT CAAGCTGCCG TGGGAAACGG CTTACTCCTC GACGGCGGCG
ATCCCGCTTC GGCCAAGCCG CGAATGGACC TACGGCCACG GGCGCGGCAC CAACGATTAC
GAGAACCTCA CCGCCTTCAT CGATCACAGC TTCAACGAGA GCTTAGATCT GCAGATCGGC
TTTTTCACGT ATGACACCTC GACCGTCGCG AAGGATTACG AAGGCACGGG CGGCGCCTCC
GTCGACATCA ACCGCCAGCT GCCCGACGGC ACGAGCAACC CGAATTTCGG CAAGCCGTTC
GCCGACTTTT TCCTGAGCAA GCAAACGCAG GATCGCTCCG TCGACGAGAT CCGCGCCCAG
CTGAACTACA ACTATCGCGG CGAGCTCTTC GGCGCGGGAT TCAACCAGCT GCTGGCGGTG
TCGGCCTCCG AGCGGCGCAC GAAAATCTCC GCGCGGCAAT ATCTGGGGCA GATCGCCAAC
AGCACCTGGG TCGACAACCC CCGCGACTGG GTGCACAACA TGATCTTCGG CCGGATCTAC
CTCGATCGGC CGAATGACTT TCAGGACGTC CCGGACGTGA TCAACGGCTA CTCGGTCGCT
TATCTGCCGA AGGCCGACGG CTACTGGTTC GACTTCGACG ACAAGTTCGA CCTGACGAGC
TACGCGCTGT TTTCCAACAG CCGGTTCTTC GACGAAAAGC TCAGCGTGGT GCTGGGCGTG
CGCTACGATT CCTACGACGA AGACCTGCGC GAGCTGCGCC GCGGCCCGGA CCTGAGCGAC
CGGCTGGTGA GTGAGAGCGA CTCCGGCACG ACCTACACCG CGGGTGCGAT CTACTACTTC
GGCTGGCTGG GCGTGTTTGC GAATTACTCG GAGAACATCC TGCCGCCGAG CGCCGGCTCG
CAGCCCTATC TCAGCGGTTC GCGGCCGGGC CCGGAGCAAA ACCAGGGGTA CGACTACGGC
CTGCGCATCT CGACAAAGGA CGGAAAGTAT TACGCGAACA TCAGCCGCTA CGACTCGCAG
TCGCAGAATC GCAACGTGGA GAACCCGGTC GATATTCGCG GCGTCTGGCA GGCGTACAAT
ATCGCCCGCG GCGCGAACCG GGACGACGGC TTCGGCGCGG TGGCGTATTC GGACACCACG
GCGATGGACG CGAGCGGCTA CGAGTTCGAG GTGACGGCAA ATCCGCTCTC GAACCTGCGG
CTGCAGGCCT CCTACAGCCT GCCCGACACG GAGATCGTGG ATTTTTATCC CATGACCCGC
GCGCACGTGC AGGAGAACCT GCCAACGTGG CAGCAGCAGC TGGACGCAAC AACGGATCCG
CTGCATGCGA GCGATCTGCG CAACGCGATT TCGCGGACGC AGGACAAGCT GGCGCAATCG
GTCGCCGGCG CGCCGCAGCA GCGTTCGGTG GACTACACCG CGAGTTTTTT TGCGAATTAC
ACGTTCACGA ACGACATGCT CGACGGTTTC TCCTTCGGCG CGGGCGCGAG CTACACCGGC
AAGCCCTATG CCGCCACGTA TGCCGGCGAG AAATATTACG GCTCGTCCGT CCACAGCGTC
GACGCGGTGC TCGCGTATGA AACCACGATC GGCCGGGCGA AGGCGCGGTT TGCGATCAAC
GTGCAGAACG TCTTCGACTA CGACGAGCCG CTGGTGCTCG ACTATCACAA CGATTACACC
GACATGAGCG GCCGGCACAT CCGCAACGGC TATTTCTACC AGACGCCGCG GACCTTCCGG
TTCACGGCGC GGTTTACGTT CTAA
|
|---|
| Protein sequence | MNTHTPRKFL PALFLAPAIA LSLSAQEAAP APGEPASAQA VGADQPIVLE RFTVDVTRDQ
GYVAVDSLAG GRTNTPIRLT PAAMSSVTRA FIDDLGIRDV REALRWAPNV LPEDPLAGRG
FGGQAFQPWA FNFRGVGAGQ QGGAGPTRNY FTFFENADAY NIERVEFTRG PNGILFGLGT
VGGTLSTYTK VPRLDKTFIS PAVIADDNGG LRFELDYNLA ANDQLAIRLN ALHDDGRGWR
NGDDSQKRAI DLAFLYKLSD RTTLRLEIEG FRSTQTLISS TIGDKASGWD GQTASETWGA
LPIGSARTVK ISAAGGWGDW LNAFPVYTPG LGKGLMLWAP WTNDPDPANP AQTVRTYHGG
YASTSSLLDP GQALIWAPYK GWYPDQIKLP WETAYSSTAA IPLRPSREWT YGHGRGTNDY
ENLTAFIDHS FNESLDLQIG FFTYDTSTVA KDYEGTGGAS VDINRQLPDG TSNPNFGKPF
ADFFLSKQTQ DRSVDEIRAQ LNYNYRGELF GAGFNQLLAV SASERRTKIS ARQYLGQIAN
STWVDNPRDW VHNMIFGRIY LDRPNDFQDV PDVINGYSVA YLPKADGYWF DFDDKFDLTS
YALFSNSRFF DEKLSVVLGV RYDSYDEDLR ELRRGPDLSD RLVSESDSGT TYTAGAIYYF
GWLGVFANYS ENILPPSAGS QPYLSGSRPG PEQNQGYDYG LRISTKDGKY YANISRYDSQ
SQNRNVENPV DIRGVWQAYN IARGANRDDG FGAVAYSDTT AMDASGYEFE VTANPLSNLR
LQASYSLPDT EIVDFYPMTR AHVQENLPTW QQQLDATTDP LHASDLRNAI SRTQDKLAQS
VAGAPQQRSV DYTASFFANY TFTNDMLDGF SFGAGASYTG KPYAATYAGE KYYGSSVHSV
DAVLAYETTI GRAKARFAIN VQNVFDYDEP LVLDYHNDYT DMSGRHIRNG YFYQTPRTFR
FTARFTF
|
|---|
| |