| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0326 |
|---|
| Symbol | |
|---|
| ID | 6205410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 390353 |
|---|
| End bp | 390937 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641689948 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001817216 |
|---|
| Protein GI | 182412150 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCCC TGGCCTTTCA GAGTGCCGCG CTGCCGCCAG CAACGAAAAT GATTACCAAC
GCTCCTCCGG CGGCAGCGCG GCCACACGAA AAGCCGACCC TGGCCGGATT GTTTGAAACG
GAGGAAAGCG GGCTGCTCCG ATTCGCGATC GGCCTGGTCG GCCGCCGGAC CGTCGCCGAG
GAACTCGTGC AAGAGACGTT TCTGCGGCTG CACCAAGTAT GGGACGAGGT CGAGAATCCC
CGCGGTTGGT TGTATCGCAG CCTGCGCAAT CTCGCGCTCA ACCACCTTCG TGACCATGCG
CGCGAGACCG AGTTGGACGA AGCCACCCAA GTCGCGGACG GCGATCTCGC TCCTGAGATC
CTGGGCCAGA TGGAGGCGGT CGGAATGGTG CGGCTGCTTT TGGCTGAGTT CAGTGAGGAG
GACCGGAGAC TGATCCAGCT GAAATACCAC GATAACCTGA AATACGGCGA CATCAGCCGC
CAAACGGGAC TGAGCGTCGG CAATGTCGGA TATCGACTGC ACCACCTGCT GAAAGGCCTC
GCGGACGCGT TGCGTCGTGC GGGCATAGAA GGGAGCCGGA GGTAG
|
|---|
| Protein sequence | MEPLAFQSAA LPPATKMITN APPAAARPHE KPTLAGLFET EESGLLRFAI GLVGRRTVAE
ELVQETFLRL HQVWDEVENP RGWLYRSLRN LALNHLRDHA RETELDEATQ VADGDLAPEI
LGQMEAVGMV RLLLAEFSEE DRRLIQLKYH DNLKYGDISR QTGLSVGNVG YRLHHLLKGL
ADALRRAGIE GSRR
|
|---|
| |