| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0080 |
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| Symbol | |
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| ID | 6205274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 91484 |
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| End bp | 92863 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641689701 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001816971 |
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| Protein GI | 182411905 |
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| COG category | [K] Transcription
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes
[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.163875 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGG ATGCCGCACT GCTCCGCCGT TACGCTGAAG CCCGCGATCA GGCTGCCTTC
GCCCAGTTGG TGCGACGGCA CGTGAATCTC GTGCACTCCG CGGCACTGCG GCAGGTCAAC
GGCGACGCGC ACCTCGCGGA GGACGTGACG CAGCTGGTGT TCGCGGACCT CGCGCGCAAG
GCACGCGCAC TGGTCGCTCA TCGCGTGCTC GCCGGCTGGT TGTTCACCAG CACGCGGTTC
GCGGCGGCGA AGCTCATTCG CGGCGAACGC CGGCGGCAGG CGCGCGAGCA GGAGGCCCAG
ACGATGCACG AACTCACTCA CGATCCCGCG GCGAACCTCG ACTGGCGGAA GGTGCGGCCG
GTGCTGGACG AGGCCATCGC CGAGCTGAAC GACACGGACC GCGAGGCGAT CCTGCTCCGG
TATTTCGAAG GCTGCGGCTA CGCCGACGTC GGCGCGCGGC TCGGCGCGAG CGAAAACACG
GCGCGGATGC GCGTGGAGCG CGCACTCGAC AAATTGCAGG CGCTGCTCGT GCGCCGCGGC
GTCACATCGA CCAGCGGGGC GCTGGCTGTG GCGCTGGCAA ACCAAGCCGT GGTCGCCGCG
CCGGCCGGAC TGGCCGCCGC GGTCACCGGT GCGGTTCTCG CCGGTTCGGG TACGGGTGCG
CTGGTCGCGG CGAGCACCGC CGCGGGAACC GCCGCCACCG TGGCCGGACT GAGCAAACTG
CAGCTCGGGC TCGCGGCCGC ACTCGTGGTG GCCGGCGGCG GCGGATACGT GGCCCGGCAC
CTGGAGGAAC GGGCTCTCGC GCATGAAGTC GCGGTGTTGC GCTCGGTGTC AGCGCAGAGG
ACGAGCGTGC AGCAGGAAAA CGACCGGTTG GCGCGGGCGT TGCACGAGGC GGAGCGGCTG
CGGCAGTCGG GAGCCGAGGT CGTGCAGTTG CAGCGGGAGG TGCGTAGTCT GCAACAGCAG
CTGGGGAGCG CGACGGCGAC GCCGGCCGGC CCCGCGCGCA GCGGGCTGAA GCCGACCGTC
GCGGGGCTGC AAAACCTGAA GGATCTCGAT CGGCTGCCGC AGATCGCGCG CACGGTCCCG
CCGGTTTATC CCTATGAAAT GCGCCGGGCC GGGATCGTGG GCTCCGTGTT GGTGCGGATG
ATCGTCGATG CGAACGGCAA CGTGCGCGAC GCGTTTCCGG CGAAATCCTC GCGGCCGGAA
TTCGAGTCGG CGGCGGTCGA GGCGGTGAAA CAATGGACGT TCGATCCGGG CGTGAAGGGC
GGACGCGTCG TCAACACCGT CATGGAGCAG CCGATCACCT TTAGCCTGAA CGACGAGAAG
GGCGTCGTCA TTGCCGACGT GAACGAACTC GTGCCCGTTG ATCACGCGGA ATGGTTCTAG
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| Protein sequence | MNEDAALLRR YAEARDQAAF AQLVRRHVNL VHSAALRQVN GDAHLAEDVT QLVFADLARK
ARALVAHRVL AGWLFTSTRF AAAKLIRGER RRQAREQEAQ TMHELTHDPA ANLDWRKVRP
VLDEAIAELN DTDREAILLR YFEGCGYADV GARLGASENT ARMRVERALD KLQALLVRRG
VTSTSGALAV ALANQAVVAA PAGLAAAVTG AVLAGSGTGA LVAASTAAGT AATVAGLSKL
QLGLAAALVV AGGGGYVARH LEERALAHEV AVLRSVSAQR TSVQQENDRL ARALHEAERL
RQSGAEVVQL QREVRSLQQQ LGSATATPAG PARSGLKPTV AGLQNLKDLD RLPQIARTVP
PVYPYEMRRA GIVGSVLVRM IVDANGNVRD AFPAKSSRPE FESAAVEAVK QWTFDPGVKG
GRVVNTVMEQ PITFSLNDEK GVVIADVNEL VPVDHAEWF
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