| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6319 |
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| Symbol | |
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| ID | 6182623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 911813 |
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| End bp | 915406 |
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| Gene Length | 3594 bp |
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| Protein Length | 1197 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641689445 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001816304 |
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| Protein GI | 172065592 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0965231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCACGG CCATTTCCGA TACACCCGCG CGCGCGGGCA TCGACATCCA CCAGTTCTAC
AGCCTCAATA TCAAGGGAGC GCCGGCCGCC GCGCTCGCTG ATGTGTACGA GTTCGAAGGC
ACACGCGGCA TCGGCGAGCC GACCAAGTAC ACGATCCGGT TCACGCATCC CCGTCATGAC
CTGTCGCGCA GCGAGTTCCT GAACCGGATG GGCGCATTCG TGATTCAGCC GCCGCCCCGA
GACCGATGGA GTCAGCCAGA CGACGCGCGG CGCGTGTCGG GCGTCGTGAC GGGCTTTGCG
TTGAAGGCTG CGAACCGCGA TCAGTCGCTG TACGAAATCG TGCTGGAGTC GCGACTGGCG
CTGTTGCGCA ATGCGCCGAA GTGTCGGTTC TTCCTCGACA TGAACATTCC CGAGATCATC
GAGCGGATTC TGCGGGAGCA CGAGTTCAAC AAGATCTTCG CCGACTTCGA ATTCCGGTTG
AATCGCACCT ACCGCAAGCG CAGCTTCGTC ATGCAATGGG GCGAGGACGA TCTCGCGTTC
ATTACGCGCT TGTGCCGGCG CTCGGGTATC TGGTTCGTGT GCGACGCAGG CGAGCGGTGC
GAGCAGGTGC GCTTCGGCGA CGACTATGCG CACTATCGGC GCGATCCCGA GCGCCTGACG
GTTGCGTATC GGCCGTACAG CGGCCTGGAT GCCGGCGGTA TCGAGTCGGT CAGCGCGCTC
GAAATGCACG CGAAGACTTT GCCGGCGGCC TACGCGGTAC GCACGTTCAA CACGGAAACG
GCGATATCGG ATCCGATCGA GGCGGTCAGT GCCGTCCGCG ACGACCGCAC GACGTATGGT
GAAGCGTATA CCTGGGGAAC GCCGGATCAG AGCGAGGACG AGGCGAAGGA AGAGGCACGA
CTGCGCAGCG AGGCAGCGCT GGCGGGCCAG GTCGAGTATC GCGGCGAGTG CGACATGCTG
GACCTCGTGC CCGGCTCGGT GCTGAAACTG TCGAACCGGG AATTGCCCGA TGCGAAGCAC
GGGCTCGTTG TCGTGCGGGT GACGTGCGGC GCGACCCGGA AGAAGGGCTA TCACGTGACG
TTCGACGCGA TTCCATCCGA TCGCCAGTAT CGGATGCCGT TGAAGGAAGA AACGTGGCCG
AGGATCGACG GGGTCATCAC CGGGACGGTC GCGTCGTCCA GCGGCGAGAA AGACCCCTAT
CTCGATAGCC AGGGCAAATA CATCGTCGAT CTTCATCTGG ACCGCGACAC GCGGACGCCC
GGTCTGCAAA GCTGTCCGAT GAGGCTCGCG AAACCGTTCG CGGGGCCGAA CCAGACCGGT
TTTCACTTTG GGCTCGTCGA AGGCACGGTG GTCGGCGTGA GCTTCCTGTG GGGCTGCGTG
GATTTGCCGT TCATCAGCCA CGTGCTGCAT ACCGCCCAAC ACACGGACCC GATCGTCGCG
GGCGTCCCAT GGGGCACGCG GAATACCCTC CGCACGCGCT CGAACAATAC GCTGGAGATG
GACGACCGGC AGGGGCGCGA GCACATCAAG GTTGCGACCG AGCACGGCAA GTCGCAGCTC
AATCTCGGGC ACATGGTGGA TCGCGGCCAG AGCGAGCGCG GCAGCGGTGC CGAATTGAGG
TCGGATGGGG CCGCCGTGCT GCGCGGCGGT CGTGGCGTGA TGGTGTCGGC CCATGCGCGA
AACGGCGCGT CCGGCACGCA ACTCGACATG CAGGAAGCCG TTGCACAGCT CGAGGACGCG
TTGGCGCTGG CGAAAGCGCT GGCGTCCTCG GCTCAGGCGT CGAACGCCGA AGCTGCCGAT
ATCGACGGTC AGCGGGCCGC GAACGAGGCG CTCGATCAGT TTCATCAGCC CGGTGTGCTG
GTGACCGCGC CGGCGTCGGC GGGCGTGGTG GCCGGCAAGA GCGTGCAGGT CGTCGCGGGC
GAAAACATCA TGAGCGTCGC GAAGGGCGAT GCGAGCTGGA GTGTCTGGAA GCGCTTTACG
GTGTCCGCGC ACGACATGGT GTCGCTGTTC ACGCAGAAAG GCATGAGCCT GATTGCGGCC
GCGGGCGCGG TCGTCGTGCA GGCACAGCGC GGCCGTATGC AGCTCGCCTC CCACGAAGAC
ATGACGGTCG AGACGGTGAA CGGCATGCTC CACGTCAAGT CGCCGAAGGA AATCGTGATG
AACGTAGGCG GCTCGTATTT CCGGATGACG CCCGGGGGTA TCGAGATGGG TACGCGCGGC
GGCGTGCTGT TCAAGACCAG CAGCCTGAAA AAGACCGGGC CCGCGCAGAT GGATCTGGGG
GGCGCGGCAT TCGCGCCGGT GTTTGTGCCG TATACGACGG GCTGCGACGT CTGGCGCACC
AATCCGGCGT TCGTGCCGCC GCACGCGCCC GCGGCCGAGA TTGTCGCGCC GGAGAACGCG
GTGGCGCCCG TACCTGATGC GGCCGGGGTC GCGCCGTCGC CGCTTGGCGA CTTTTTCTCG
CGTCTGTCCG GCAGCGCCGT GCCGCCGTGG GCGTCTGCCT TTTCTCCGTT TGATGGCAAG
CTGTCAAACG TGGATACCGA CATCCCCAAA GCCAAGGTCA CACTGAACAG TCCGGATGAT
CAGAAGCAAA CCCTGGTGAC GCCCGATCCG ATCAAGCTGG CGAATGCGGT GCCCTGCGAT
TGGAAAATAT CGGACCTGAA GGCCGACGTA AAGGGGCACA TTGAATCCGT TTCGTATTGG
GGTGTGCTGA ACGACCGGAC ACCTTGGCGG GACCCTAAGA CAGGCGCTCA ATATAGAGGC
GGCGGTTCGA GATCCTCGCA TTTCGAATTT TCCTATAGCG AACACGACAA GGCGATTACC
TGTACGGTTC GCGCCATGCT GATTCCGATG GATCTTTTTC CGGTCGATCT GAAAGGCGAG
CGTGATACGT CGGTGCCGGA CGATCAAGCG TCGATTCCTT ACGAGTACTC CCATCATTCG
ATGATGATGC CCGGCTCCAC AGTTGACGGC GTAAGAATGG ATTATCGCGA TGCGGTCGGG
CCGGGATTTG ATGTTATGGC ACTGATAAAC CGCATCGAGG CTGTGTTGAA TCAGGGGAAC
TACAAGCTGA TCCTGGACGG GTGCTCCAAG GGCGCAGCGT GCGGCTGCCG AGTGAAAGTC
AAATTCAGGA TCGATCTTCG CGTGTCGATT AAGGGTGCAC CGATTAATGG ATTCAAGCCG
CATGTCACGC TCAAGCTGTT TCCGCAAGTG CTTCGGGCGG ATACGGGGGC GTGGGGGGAG
AGGCATAAAT GGAAGGATGA GTCAAAGAAA ATACAGGACT ACCCGGACGC AAATGTTGAG
GCGCATGAGT GTGGGCATTA TTTCAATTTC CCGGACGAAT ATTACGGTCA GGGAGGGTGG
CTACACGAAT CGTATATCAA GAACGAGGAG ATCGATTTTT CGCTTGTTGA CGCGAACGCA
GGAACTCGGT TCTGGCAGGG CCATTCAGTC GCCAATGTTA TGGGCGACGG TGCCAATTCC
CCTTTGCAGC CGGGCCGAAG TACGGCAAGT ATCGAGCCTT ATTATCTTGA ATATGTGCGA
CGCCAGTTTT CGCTTGCGAC CAATAAATTA TGGAGGGTTG GCTATGATGC GTAG
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| Protein sequence | MSTAISDTPA RAGIDIHQFY SLNIKGAPAA ALADVYEFEG TRGIGEPTKY TIRFTHPRHD
LSRSEFLNRM GAFVIQPPPR DRWSQPDDAR RVSGVVTGFA LKAANRDQSL YEIVLESRLA
LLRNAPKCRF FLDMNIPEII ERILREHEFN KIFADFEFRL NRTYRKRSFV MQWGEDDLAF
ITRLCRRSGI WFVCDAGERC EQVRFGDDYA HYRRDPERLT VAYRPYSGLD AGGIESVSAL
EMHAKTLPAA YAVRTFNTET AISDPIEAVS AVRDDRTTYG EAYTWGTPDQ SEDEAKEEAR
LRSEAALAGQ VEYRGECDML DLVPGSVLKL SNRELPDAKH GLVVVRVTCG ATRKKGYHVT
FDAIPSDRQY RMPLKEETWP RIDGVITGTV ASSSGEKDPY LDSQGKYIVD LHLDRDTRTP
GLQSCPMRLA KPFAGPNQTG FHFGLVEGTV VGVSFLWGCV DLPFISHVLH TAQHTDPIVA
GVPWGTRNTL RTRSNNTLEM DDRQGREHIK VATEHGKSQL NLGHMVDRGQ SERGSGAELR
SDGAAVLRGG RGVMVSAHAR NGASGTQLDM QEAVAQLEDA LALAKALASS AQASNAEAAD
IDGQRAANEA LDQFHQPGVL VTAPASAGVV AGKSVQVVAG ENIMSVAKGD ASWSVWKRFT
VSAHDMVSLF TQKGMSLIAA AGAVVVQAQR GRMQLASHED MTVETVNGML HVKSPKEIVM
NVGGSYFRMT PGGIEMGTRG GVLFKTSSLK KTGPAQMDLG GAAFAPVFVP YTTGCDVWRT
NPAFVPPHAP AAEIVAPENA VAPVPDAAGV APSPLGDFFS RLSGSAVPPW ASAFSPFDGK
LSNVDTDIPK AKVTLNSPDD QKQTLVTPDP IKLANAVPCD WKISDLKADV KGHIESVSYW
GVLNDRTPWR DPKTGAQYRG GGSRSSHFEF SYSEHDKAIT CTVRAMLIPM DLFPVDLKGE
RDTSVPDDQA SIPYEYSHHS MMMPGSTVDG VRMDYRDAVG PGFDVMALIN RIEAVLNQGN
YKLILDGCSK GAACGCRVKV KFRIDLRVSI KGAPINGFKP HVTLKLFPQV LRADTGAWGE
RHKWKDESKK IQDYPDANVE AHECGHYFNF PDEYYGQGGW LHESYIKNEE IDFSLVDANA
GTRFWQGHSV ANVMGDGANS PLQPGRSTAS IEPYYLEYVR RQFSLATNKL WRVGYDA
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