| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6171 |
|---|
| Symbol | |
|---|
| ID | 6182590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 754602 |
|---|
| End bp | 758978 |
|---|
| Gene Length | 4377 bp |
|---|
| Protein Length | 1458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641689299 |
|---|
| Product | outer membrane autotransporter |
|---|
| Protein accession | YP_001816158 |
|---|
| Protein GI | 172065446 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGGG TCTATCGGCT GGTCTGGAAC CGCACCTTGC GCGCCCCGCA AGTGGTATCC
GAACGCACAC GCGCGTCGCA CGGCGGGATC GACGCCAGCC ATGGCGCCAC GCCTGCGCGC
CGCTGCGCGT CCATCGTTTC CATCGGCGTG TCGCTCGGTC TGGCCGGCAC GGCCCTCCCA
GGCTGGGCCG CCACGTGCAC TGCCAGCACC ATCGCGAATT GCAGCGCCCC CGGCGGCAAC
GGTATCCCGG ACCGAAGCGG CAATGGCGGC AGCGGTAATG GCGGTGGCGG TGGTTCCTCT
GCGTTGGGCG GAGGAACCAT CACGATTCAG GTTCCTGGCG GGCCCACGTC GGGTGGGACC
GGCGGTACCG GTGCCACGAA CGACAGTGGC CAAGGCGGCC CCGGAGGGGC GCCCGACGTG
GTGATCGCCG GCGATGCCGT GGTCAACGGG AGCGCTCAGG GAGGCGCAGG CCAGGGCTTC
GATGGACTCA ATTTCGCGGG CGGCGGCGGC GGCGGTGGCG CGGGCGTGTA TTCGACCGGC
ACCAGCGTGA CCGTCAACGA CGGCGTGACG GTGCAGGGCG GCACAGGCGG AAATGGCGGC
GCGGGCACAT CGGGGCCTGC CTCCAACGGC GGCGGGGGTG GAGGCGGGGG CGGTGCGCTG
GTGATCGTGA CGCCTGCGGC CGACGTGACG AACCACGGCA CGCTCATTGG CGGAAATGGC
GGCAACGGGG GAGGTGGCGG AAACCCGGGA GGCGGCGGCG GTGGCGGCGA CGGGCTGCTG
ACCGTGGGAC CGGGTTCGCA GGTGACCAAC CTTGGGACGA TCGTCGGTGG TGTGGGCGGT
GCCGCTGGCG GTGGCGGAAG CACGGCCGGC GCCAGCGGCG CGGGCGTCAA CCTGGCTGGC
GGGTTCACCG TGCTGTCCAA CGTCGGCACG ATCACGGGCG GTGCCGGCAA CGGAGGGGCC
GCGGGAGCGG GTGTCATCGC CAATGGCGGC GATGTCATCG TCAACGGCGG CACGATTGCG
GGCGGCTTGT TCGCGGACGG CGTGACGCGC GCGGCAGCCA TCCGGTTCAA CGGAGCGAAC
GATACGCTGC AGTTGGTCGG CGGGTCCAAC ATCATCGGTG ACCTCGATGT GGCGGCGGGT
GCGTCGGCCA CCATCACCGC GGGCACGCCG GGGCTTGCGC TGTCCAACAA CATCACGCTC
GGCGATGCCG CATCCCGCGT GACCTTGAAC TCAAACACGA CGGATCTCGC GGTATCAGGC
GTCATATCGG GGACGGGCAA CGTGGCCGTG AGCGGCAGCC ACACGATCAC GCTGACGGGT
GACAGCACCT ATACCGGCGG CACCACGATC AGCGCCGGCA CGCTGCAGAT CGGCAATGGC
GGAGCCACCG GCTCCGTCGT CGGCGACATC GTCAACAACG GCACGCTGGC TTTCAACCGC
AGCGACACGG TGTCGTATGG CGGCACCATC AGCGGGACGG GCAGCCTCGT GCAGGCGGGT
ACCGGCACGC TGGCGATAGC CGGCGCCGCC GGCTATGCGG GGAGCACCAC CGTCAACGCG
GGCACGCTCG CGCTGATCGG CGCGGGCAGC ATTGCCGCTT CCAGCGGGCT CGTCAACAAC
GGCACGTTCG ATATCTCGGG GACTACCTCC GGGGCCACGA TCAATGCGAT CACTGGCACG
GGCACGGTCG CGCTGGGCGA TCGGACACTG ACGCTGGCCA ATGCGGCCGG CACGTTCGCC
GGAACCATCG GCGGTACGGG TGCGGTGACC GTCGGCGGCG GTACGCAAAC GCTGTCGGGG
GTGAACACCT ACACGGGCGT CACTACCGTC AATGCCGGCA CGCTGGCGTT GACTGGCGCC
GGCAGCATCG CCGCTTCCAG CGGGGTCGTC AACAACGGTA CGTTCGATAT CTCGGGGACT
ACCTCCGGGG CCACGATCAA TGCGATCACT GGCACGGGCG CGGTTGCGCT GGGCGGCCGG
ACATTGACGC TGGCTAATGC ATCCGGCACG TTTGCCGGAA CCATCGACGG TACGGGCGCA
GTGACCATAG GCGGCGGTAC GCAAACGCTG TCCGGGGCGA ACACCTACAC GGGCGTCACC
ACCGTCAATG CCGGCACGTT GGCATTGACC GGCGCCGGCA GCATTGCCAC TTCCAGCGGC
GTCATCAACA ACGGCACGTT CGATATCTCC GGGACCACCT CAGGGGCCAC GATCAATGCG
CTCACTGGCA CGGGCACGGT TGCGCTTGGC GACCGGACAC TGACGCTGGC CAATGCAGCC
GGCACGTTCA GTGGCGCCAT TGGCGGCACG GGCGGGCTCA CCGTGGCGGG CGGCACGCAG
ACGCTGTCGG TTGCCAACGG CTATACCGGC GCAACGTCGA TCAGCGCCGG CACGCTCGCG
CTGTCAGGCG CCGGCAGCAT TGCCGCTTCC AGCGGGGTCA TCAACAACGG CACGCTCGAT
ATCTCGGGGA CCACCTCCGG CGCAACGGTC AACGCACTGA CCGGCACGGG CACGGTTGCG
CTGGGCGGCC GCACGCTGAC GCTGGCCAAT GCGGCCGGCA CGTTCAGTGG CGCCATCGGC
GGTACCGGCG GGCTTACCGT GGCGGGTGGC ACGCAAACGC TGTCCGGTGT GAACACCTAT
ACCGGGGCGA CGATGGTCCA CGCGGGCACG CTGGCGTTGT CGGGTGCCGG CCGGCTCGCC
TCTTCCACGT CGGTCACGCT CGCCGGCGCA ACGGCCGCGC TCGACCTGTC CGCCGTCGGC
AACCAAACGG TCGCGCATCT GTCCGGCGTG GCGGGCAGCC GGGTGGTGCT GGGTGGCAGT
GCGCTCACGC TGTCCGACGA CTCGTCGCAA ACATTCGGCG GCAGCCTCGG CGGCACCGGC
GGTTTGGTCA AACAAGGCGC GGGCACGCTG ACGCTGAACG GTGTCAGCAG CGCGTTCTCC
GGGACGACGA CGGTGGCTGG CGGCACGTTG GCCGTGGGCG ACGCGGCCAA TGCCGGTGCG
GTGTTGGGTG GCAATGTCCT GGTGAGTTCG CTTGGCACGT TGCGCGGCCA TGGCACGGTA
TCGGGCGACG TCAGCAGCAG TGGCGTGGTC GCGCCGGGCG GCTCCATCGG AACGCTGTCC
GTGGGCGGCA ACTATACCCA GGCGGCGGGC GGCACCCTGT CGATCGAGGT CAGCCCGACG
GAGGCATCGC AACTTCGCGT AAGCGGTACC GCGACGCTCA ACGGCTCATT GGCCGTTCTG
TTCGATCCCG GCACCTATAC CGCACGCCGC TACACCGTGC TGAGCGCCGC CAACGGCGTG
ACGGGCCGCT TCGCGAACGT CGGCACCACC ACGGCCGGCG CGAATCTCGG CGCGTTGCAG
TCATCGGTGG ACTACGGTGC CAATGGAGTC GACTTGCTGC TCGCCGATGC CACCGGGCCC
ACGCCGGCCG GCCCGACCGT AATTGCGCCG ACCAAGACCT CCATCTACAC GGCGCTCGGC
ACGGCAGCAT TGCTTCAGGC GCAGGGCGCG AGTTCGACGC TGCTCGGCCG TCTGGCGGAC
CCGCGGGACA ACGCGGCAGG TTCCCGCAAC GTGTGGGCCG TTGCCAGCGG TTCCAGCACC
AAGGTGGGCG GCACGGGCGG CGCGCCCGGC TTTCTTACCC ACGCCTATGG GTTCCTGGCA
GGCGCGGGAG GACGGCTCGG CGATGCCACG ATCGGTGCGG CCGGCGGCTA CACGCACACC
ACGCTGGGTG AAGACACGAC AGGTGCATCG GGTGCCATCG ATACGCTGCG TGTCGCCCTG
TATGGCGCGC AGCCCGTGGG TGCCGTCAAC CTGTCGGCCA CGGTCGGGTA TGGGCTGGAT
TTCCTGTCGC AGAAGCGGCC GTTCGGCAGC GCGGGTACCG CAGAAGGCGA TCATCTCGGC
CACGAGTTCA CCGCCGCGAC GCAGGCCAGC CTGCCCATGG ACGCCGGCGG CCTTCGGATC
GCGCCCCACA TCGGGCTCCG GTATGCGTAC GTGCGCGGCA GCGGCTTCGG CGAGAGCGGC
GCCAACGGCC AGAACCTGCA CGTCGGCCCC GACAGCGCGA GGAGCCTCCA GCCTTACGTG
GGTGTCTCGC TCGACAAGGC CTTCGGCGAT GCCCTGCGCC CCGTCAACGT ACAGCTTCGC
CTGGCCTATG CGCACGAGGT ACTGGGAGCC GGCCGCGTCG TCCAGGTGCA GAGCCAGGAC
GGGACCGTGT TCGCCGCGCC AGGCACCGAT CTGCCGCGTT CATTCCTGAC CACGGGCGCC
GGCGTCACCC TTCAGGCCGC CAAGGCGACC ACGGTATCGC TCGGGCTGGA TGCGACGATT
GACACGAGCC ATGTGTCGGC GCAGTCGGCG TATGTGCGAG TCAATCACAG GTTCTGA
|
|---|
| Protein sequence | MNRVYRLVWN RTLRAPQVVS ERTRASHGGI DASHGATPAR RCASIVSIGV SLGLAGTALP
GWAATCTAST IANCSAPGGN GIPDRSGNGG SGNGGGGGSS ALGGGTITIQ VPGGPTSGGT
GGTGATNDSG QGGPGGAPDV VIAGDAVVNG SAQGGAGQGF DGLNFAGGGG GGGAGVYSTG
TSVTVNDGVT VQGGTGGNGG AGTSGPASNG GGGGGGGGAL VIVTPAADVT NHGTLIGGNG
GNGGGGGNPG GGGGGGDGLL TVGPGSQVTN LGTIVGGVGG AAGGGGSTAG ASGAGVNLAG
GFTVLSNVGT ITGGAGNGGA AGAGVIANGG DVIVNGGTIA GGLFADGVTR AAAIRFNGAN
DTLQLVGGSN IIGDLDVAAG ASATITAGTP GLALSNNITL GDAASRVTLN SNTTDLAVSG
VISGTGNVAV SGSHTITLTG DSTYTGGTTI SAGTLQIGNG GATGSVVGDI VNNGTLAFNR
SDTVSYGGTI SGTGSLVQAG TGTLAIAGAA GYAGSTTVNA GTLALIGAGS IAASSGLVNN
GTFDISGTTS GATINAITGT GTVALGDRTL TLANAAGTFA GTIGGTGAVT VGGGTQTLSG
VNTYTGVTTV NAGTLALTGA GSIAASSGVV NNGTFDISGT TSGATINAIT GTGAVALGGR
TLTLANASGT FAGTIDGTGA VTIGGGTQTL SGANTYTGVT TVNAGTLALT GAGSIATSSG
VINNGTFDIS GTTSGATINA LTGTGTVALG DRTLTLANAA GTFSGAIGGT GGLTVAGGTQ
TLSVANGYTG ATSISAGTLA LSGAGSIAAS SGVINNGTLD ISGTTSGATV NALTGTGTVA
LGGRTLTLAN AAGTFSGAIG GTGGLTVAGG TQTLSGVNTY TGATMVHAGT LALSGAGRLA
SSTSVTLAGA TAALDLSAVG NQTVAHLSGV AGSRVVLGGS ALTLSDDSSQ TFGGSLGGTG
GLVKQGAGTL TLNGVSSAFS GTTTVAGGTL AVGDAANAGA VLGGNVLVSS LGTLRGHGTV
SGDVSSSGVV APGGSIGTLS VGGNYTQAAG GTLSIEVSPT EASQLRVSGT ATLNGSLAVL
FDPGTYTARR YTVLSAANGV TGRFANVGTT TAGANLGALQ SSVDYGANGV DLLLADATGP
TPAGPTVIAP TKTSIYTALG TAALLQAQGA SSTLLGRLAD PRDNAAGSRN VWAVASGSST
KVGGTGGAPG FLTHAYGFLA GAGGRLGDAT IGAAGGYTHT TLGEDTTGAS GAIDTLRVAL
YGAQPVGAVN LSATVGYGLD FLSQKRPFGS AGTAEGDHLG HEFTAATQAS LPMDAGGLRI
APHIGLRYAY VRGSGFGESG ANGQNLHVGP DSARSLQPYV GVSLDKAFGD ALRPVNVQLR
LAYAHEVLGA GRVVQVQSQD GTVFAAPGTD LPRSFLTTGA GVTLQAAKAT TVSLGLDATI
DTSHVSAQSA YVRVNHRF
|
|---|
| |