| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6072 |
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| Symbol | |
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| ID | 6182023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 643237 |
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| End bp | 646614 |
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| Gene Length | 3378 bp |
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| Protein Length | 1125 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641689202 |
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| Product | YadA domain-containing protein |
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| Protein accession | YP_001816061 |
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| Protein GI | 172065349 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.613322 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGGA ACCAGATTTC GGCGCTCGTC GCCGCCATGT TCGCAAGCGC AGGTGTGCTG
GTCGCGGGGG CCGCACACGC GGACAACTTC GTCGATCGCG GCAACCCGGA CAACGCGCTG
AACGGGCAGT GCATCGACGG TACGAACCCG TTGTGCGTCG CGACGAAGAG TGGGACGTTC
GTCGCGACGA GCAGCACGAA CTTCACGTCT GGAACGAATG CGAAGGCCGG CTCCAGCGGT
ATCGCGATCG GCGACCAGTC GAACGCGGGT AGCCAGGGCG GCTCCGGCAG CGGCGGCGGC
ATTGCGATCG GCGTCGGCGC GCAGGCACTG GCGAACTCGG CCACGGCGAT CGGCACGGTG
GCCGTCGCGC AGGGCAATAC GGCACTCGCG GTCGGCCGCC AGTCCGCTGC GATCGGCGAT
TACTCGATGG CGCTCGGCAA CGTCGCCGAT GCGCATGGGA CCAGTTCGAT CGCACTCGGT
CACTCGGCGC TGGCGAGCGG CGATCGCTCG ATTGCAATCG GCGGCGCGAA TCCGACCACG
AGCGACGGCG TGTCGAACGG TGCATCCTAC GATGCGGCGA CGCAGACCCG TGCGGGCGGC
ACGCAATCCG TCGCGATCGG CGCCGGCGCG CAGACGAACG ACAACAACCA GGTCGCGATC
GGCTCGGGCA GCGTCGGTGC GAACAACGGC GGCACGCCGG TATTCGGCGG CACGGCTGCA
CCGGTCGGTG GCGCCGTCTC GTTCGGTTCG CTCGGCCACG AACGCCAGAT CAAGAACGTC
GCGGCGGGTG CGGCCGATAC GGACGCCGTG AACGTCCAGC AGCTGAAGAA CGTGAACAGC
ACGCTCAGCA CCGGCATCGC CAACGTCGAC GCCCGCGTGA CCTCCGTCGG CAACACGCTG
TCGACGTCGA TCGCGAACGT CGACCAGCGC GTGACCAACG TCGGCAACAG CCTCAGCACG
AGCATCGTGA CGGCGACGCA GAACGTCGTC AAATACACCG ACGATTCGCA CGCCGCGATC
GCGCTCGACG GCAGCAACGG CACGACGATC GGCGGTGTCG CGGCCGGGGT CGCCGATACG
GACGCGGTCA ACGTCGGCCA GCTGAAGGGC AGCGTTGCAC CGCTGCAGAC CTCGCTGTCG
ACGGCCGCCG CGAACATCAC GAACCTGCAG AACAACGTGA CGGGCCTCAA CGCATCGCTG
AGCACGGCCG CGTCGAACAT CGGCGGCCTG CAGGCAGCCG ATGCGCGCAA CGTGAAGTAC
GACGGCGCGA GCGGCTTCGA CTCGGTCACG TTCGCCGGCC CGAACGGCAC GACGCTGCAC
AACGTCGCGG ACGGCGTGAG CGCGAACGAC GCGGTGAACG TCGGTCAGCT CGGCAAGGCG
ACCGATACGC TGAACCAGTC GATCGCCAAC GTCGGCAACA GCGTGACGAA GCTCGGCGAC
CAGGTGACGA CGAACACCGG CAACATCGCC GCGCTGCAGC AGGATGCGCT GCAATGGAAC
CCGAGCCTCG GCACGTACGA TGCGAGCCAC GGCGGAAACA GCCCGCAACG CATTGGCAAC
CTCGCGGCCG GCCAGAACGG CACCGACGCG GTCAACGTGG ACCAGCTGAA CGCGGCGATT
CACGACGGCA CGAGCCAGCT CGACGCGCTC GCCGTGAAGT ATGACGATCC GAGCAAGCGT
CAGGTTTCGC TCGGCACGGG CAACGGCGGG GTTCTGGTGC GCGTGACCAA CGTCGCCGAA
GGCAACGTGT CGACCGGCAG CACGGACGCC GTGAACGGCG CGCAGCTACG CCGCGCGATC
GACGGCACGG CAGCCGCGCT CGGCGGTGGC GCGACGGCGA ACACGGATGG CTCGATCACG
GCGCCCGCGT ACAAGATCGG CGGCGATTCG TTCAACAACG TTGGCGACGC GCTGACGAAC
CTCGATGGCC GTGTCGGCAG CAACACGACG ACGCTTGGGA ATCACGAGAC GCGAATCGGC
AACGCCGAAA CGAACATCGC CGTCAATACG AACGCGATCG CCGGCCTGCA GAAGGATGCG
CTGCAGTTCG ACCCGACGCT CGGCGCATAC AACGCCGCCC GCGGCGGCGC GCCGACCAAG
CTGACCAGCA TCGCCGACGG CAATGTCGCG GCCGGCAGCA CGGATGCGGT GAACGGCGGC
CAGTTGTACG GCGTGAAGTC CGATCTCGAG CAGCAGATCA CGCAGGTGTC GAACCAGACG
GGCGAGGCCG TGAAGAACGT CGTCAAGTAC GACGTCGACG GCAACGGCAA CCGGCTGAAC
TCGGTATCGC TGATCGGCGG AAACCCGAAT GCGGCGGTCG TGCTGAAGAA CGTCGCGGCC
GGCACCGACG ATACGGACGC GGTGAACGTG AAGCAGCTGA AGTCGGTGCA GTCGAACCTC
GACCAGCTCG GCGCGCTCGC GGTGCAGTAC GACGACAGCT CGAAGGGCTC GATCACGCTT
GGCGGGGCCG GTGGCACGCG CATCACCAAC GTGAAGGCCG GCACGCTCAG CGCGACCAGC
ACCGACGCGG TGAACGGCTC GCAGCTCTAC GCGACGAACC AGCAGGTGTC GAAGAACACG
ACCGATATCG CGAACCTGCA GGACAACGTG ACCAACATCG CGAACGGCAA GGCCGGGCTC
GTGCAGCAGC AGGACCCGAA AAGCGCGATC ACGGTCGGCA AGGACTCGGG CGGCACGAGC
GTGAACTTCA CCGGCACGGC GGGCGACCGC GTGCTGACCG GTGTCGCGGC CGGCGTGAAC
GCCAACGACG CGGTCAACAT GGCGCAGTTC AACGACGCGC TGAAGACGGC GGCGGTCAAC
GACCAGATCC GTGCGGCGGC AACCGATGCG AACACGACGT GGATCGCGCG TGCCGATGCC
GGTTCGATCG GCTCGACGGC GACGGCAACC GGCAAGAACG CGGTGGCGGT CGGCCAGGGC
TCCGTTGCGG ATCGGGACAA TTCGTTCTCG GTCGGCGCGA AGGGCAACGA ACGGCAGGTC
ACCAACGTGG CGGCCGGCAC GGCGTCGACC GACGCGGTGA ACGTGCAGCA GCTGAACGAC
AACCTCAATG CCGCGTCGAC GCAGGCGAAG GGCTACACCG ACCAGCGGAT CGGGCAGGTG
TACAACTCGT TCAACGACCT GAAGAAGGAC ATGTACGGCG GCGTGGCGTC GGCAATGGCG
GTGGCCGGTT TGCCGCAGCC GACGGGGGCG GGGCGCTCGA TGGTGTCGGC GGCGACGTCG
AACTATCACG GGCAGCAAGG CTTCGCGGCC GGGTATTCGT ACGTGACGGA AAGCAATCGC
TGGGTCGTCA AGGCGTCGGT GACGGGCAAT GCGCGTTCCG ACTTCGGCGC GGTGGTCGGC
GCAGGCTATC AGTTCTGA
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| Protein sequence | MQRNQISALV AAMFASAGVL VAGAAHADNF VDRGNPDNAL NGQCIDGTNP LCVATKSGTF
VATSSTNFTS GTNAKAGSSG IAIGDQSNAG SQGGSGSGGG IAIGVGAQAL ANSATAIGTV
AVAQGNTALA VGRQSAAIGD YSMALGNVAD AHGTSSIALG HSALASGDRS IAIGGANPTT
SDGVSNGASY DAATQTRAGG TQSVAIGAGA QTNDNNQVAI GSGSVGANNG GTPVFGGTAA
PVGGAVSFGS LGHERQIKNV AAGAADTDAV NVQQLKNVNS TLSTGIANVD ARVTSVGNTL
STSIANVDQR VTNVGNSLST SIVTATQNVV KYTDDSHAAI ALDGSNGTTI GGVAAGVADT
DAVNVGQLKG SVAPLQTSLS TAAANITNLQ NNVTGLNASL STAASNIGGL QAADARNVKY
DGASGFDSVT FAGPNGTTLH NVADGVSAND AVNVGQLGKA TDTLNQSIAN VGNSVTKLGD
QVTTNTGNIA ALQQDALQWN PSLGTYDASH GGNSPQRIGN LAAGQNGTDA VNVDQLNAAI
HDGTSQLDAL AVKYDDPSKR QVSLGTGNGG VLVRVTNVAE GNVSTGSTDA VNGAQLRRAI
DGTAAALGGG ATANTDGSIT APAYKIGGDS FNNVGDALTN LDGRVGSNTT TLGNHETRIG
NAETNIAVNT NAIAGLQKDA LQFDPTLGAY NAARGGAPTK LTSIADGNVA AGSTDAVNGG
QLYGVKSDLE QQITQVSNQT GEAVKNVVKY DVDGNGNRLN SVSLIGGNPN AAVVLKNVAA
GTDDTDAVNV KQLKSVQSNL DQLGALAVQY DDSSKGSITL GGAGGTRITN VKAGTLSATS
TDAVNGSQLY ATNQQVSKNT TDIANLQDNV TNIANGKAGL VQQQDPKSAI TVGKDSGGTS
VNFTGTAGDR VLTGVAAGVN ANDAVNMAQF NDALKTAAVN DQIRAAATDA NTTWIARADA
GSIGSTATAT GKNAVAVGQG SVADRDNSFS VGAKGNERQV TNVAAGTAST DAVNVQQLND
NLNAASTQAK GYTDQRIGQV YNSFNDLKKD MYGGVASAMA VAGLPQPTGA GRSMVSAATS
NYHGQQGFAA GYSYVTESNR WVVKASVTGN ARSDFGAVVG AGYQF
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