| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5930 |
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| Symbol | |
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| ID | 6182177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 474539 |
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| End bp | 478843 |
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| Gene Length | 4305 bp |
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| Protein Length | 1434 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641689061 |
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| Product | YadA domain-containing protein |
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| Protein accession | YP_001815920 |
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| Protein GI | 172065208 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGT CGTTCAAGTC GATCTGGAAC GAAGCACTGG GGGCGTGGGT TGCGGCGTCC
GAGCTCGATC GCGCGCGCGG CAAGCGGGTT GCGTCGTCGC GAAGCGCGTC CGCGCATGCG
GCAGACGCGT GCGCCGTCGC GTGCATCGCG ACGAAGCCGG CGCTCTCGCC CAGGCGGCTC
GTCGTGATGA CGGCGGCCGC GTATCTCGGG CTGTTTCAGG CCGGTGCGCA TGCGCAATAT
TCGGCAGGTG GTGGCTCCGC GACCGGCGGC GCCAGTTCGA CCGCGATCGG CAACGGGTCC
GTAGCGTCGC AAGTGAATGC TACCTCCTAC GGCAACCTGT CGACGGCGGC GGGCCAGTCG
TCCACGGCGA TTGGCCCCGG CGCGCGTGCG ATGGCCGATG GTGGGACGGC CATCGGCATC
AACTCGCAGG CGACCGGCTT CAACAGCGCG GCGCTGGGCG TGCAGGCGAT CAGCAGCGGC
GCTTTCTCGG TTGCCATCGG CAATCTCTCG AGTGCGACCC AAAGCGGCGC GGTGGCGATG
GGCAGCGGCG CGGCCGCGAC CGGCGTTTCG GCTGTCGGGC TCGGCAACAA TGCGTTGGCG
TCGGGCCAGT ATGCGGCCGC GCTCGGTCTC GGGGCGAGCG CGGTGGGGGC TCAAAGCGTC
TCGCTCGGCT ATGCGTCGAA TGCAACCAAT ACGGGCTCGG TCGCGCTCGG CAACCAGTCG
ACGAGTTCGG GCGCGGCCGG CGTTGCGGTG GGCAGTGGCA CGCTGGCTTC CGGAAATTCG
GGTGTGGCGA TGGGCGTCAA CAGTGGCGCG AAAGGTACCG CGTCGATCGC GATCGGCTGG
GGCGGCACAG CCGGCGTGCC CGGTTCGGGC ACGCAATCGC TCGGCTCCAA TTCGATGGCG
ATGGGCTCGA ATACGACGGC CAGCGCCAAC AATGCGATTG CGTTCGGTGT GAACACGGTT
GGATCGGGCG TCAGTTCGAT CGCGATGGGC GTTCAATCGA GCGCGACGCA GCAGTTCGGC
CTTGCGTTCG GCAATCTCGC GCTCGCCACC GGCGTTGGGG GGACGGCCTT GGGCGCCAGC
GCGACGGCAT CGCAGACCAA CGCCTTCGCA GCGGGAACCT CGAGCAACGC GACCGGTGTC
AACGCGATCG CCCTGGGCAC GCAGGCAACG TCCGCAGCCA CGAACGCGGT CGCCTTGGGG
GCTGCGTCCT CGGCGACCGA CGACGGCAGT GTTGCCATCG GCGCTTCGTC GAGCGCCGGC
AACAACACCG GCACGCCGAC CTATCGCGCT ACGGCGGTCG GTGCCGCCAG CCAGGCGACA
GGTCAGTTCT CGTCCGCATT CGGCGCGAGC GCGGCCGCGA CCGGCACTGC CGCCGTGGCG
ATCGGCGATG CCGCCAATGC GTCGGCCACC AATGCGATCG CCATGGGCAG CAGCGCTGCC
GCCGCTTCCG GCAACGCCGT GGCGATCGGC ACGGGCGCCA CCGCCACCGG CGGCGCGGCG
GTTTCCATCG GCGCGGGTAA CACCGCCGTC GGCAATGGCG CGGTAGCGAT TGGCGATCCG
AGTTACGCCA GCGGCACCGG TGCGTTCACG GGTGGCGCGA ACAACATTGC CAACAGCGAC
GGCACCGCAT CCGCGACGGT CTCCAATCAG GCCAATGGCG CGGTGGCGAT CGGCAACAAC
AACAAGGCGA TCGGTCAGGG CAGCGTCGCG TTGGGCAACG CTTCGACGGC GGGCGCGGCG
GGAATGGCCG GCAACGTCGC GTTGGGTGAC GGCGCGACGG CGGCGACCAG CGCTGGCGAC
GTCGCGCTCG GCTCGGGGTC GGTGACGGCC GCGCCGAACC CGACCGCGTC GGCGACGATC
GGCGGCGTCA CGTACAGCTT CAAGGGTATC AATCCGACGA GCGTCGTCAG CGTGGGCAAC
GTTGGCACCG AGCGTCAGAT CACCAACGTC GCGGCCGGGC GCATCAGTTC GACGAGCACG
GACGCGATCA ACGGTTCGCA GCTCGATGCG ACGAACCAGG CGGTGACATC GCTGTCGACG
TCGACGTTGT CCAGCATCAC GTCGTTATCG ACTTCGACGT CGACCGGGAT CGGTTCGTTG
TCCACGGGCC TCAGCTCGAC CAACAGTTCG GTGACGTCGC TGTCGACGTC CACGTCGACG
GGGCTGTCGT CGGCCAATAG CGCGATCACG TCGCTGTCGA CTTCGACGTC GACCGGCATC
AGCTCGTTGT CCACGGGCTT GAGCTCGACC AACAGCGCGG TGACGTCGTT GTCCACGTCG
ACGTCCACGG GAATCGGTTC GCTGTCCACC GGCCTGAGCG CAACGAACAG CGCGATCACG
TCGCTGTCGA CGTCGACCTC GACCGGCCTC AGCTCGCTGT CCACCGGCCT GAGCTCGACG
AACAGCACGG TCACGTCGCT GTCGACTTCG ACGTCCACCG GCATCGGCTC GCTGTCCACC
GGCCTGAGCG CGACGAACAG CAACCTCACC TCGCTGTCGA CCGCCACGTC GACGGGCATC
GGTTCGCTGT CGACGAGCCT CAGCTCGATC GTGAACAACA ACACCAATCT CGGCAACAGC
ACGGCCGGCG CGATCGGCGG CGGCTCGACC TACGACCCGA CGACCGGCAC GATTTCGGCG
CCGTCGTACG TGACGTACAA CAGCGACGGC TCGACCACGA TCAACAACAA CGTCGGTTCC
GTGGTCGACA ACATCAACGC GCACGGCATC AAGTATTTCC ACGCGAACTC GACTGCGCCG
GACAGCCAGG CGATCGGCGT CGACAGCGTC GCGATCGGCC CGAACGCGAT CTCGCTCGTG
AACGGCAGCA TCGCGCTCGG TTCCGGTTCG GTCGCCGATC GGCCGACGGC GCCGTCGTCG
GGCATCATCC GCAACGGCAC CGCGGCGATC CCGTTCAACA CGACGGACCA GACGCTGCTC
GGCGCGGTGT CGGTGGGCGA CACGACGAAC CGCACGTATC GCCAGATCAC CAACGTCGCG
GACGGCACCG GGCAGCAGGA CGCTGTGACG GTACGGCAGC TGACCGGTGC ATTGCAGTCG
TTCGCGGTCA CGGGCCAGAA GTACTTCCAC GCGAATTCGA CGGCCGGCGA CTCGCTCGCG
GTCGGCGCGG AATCGGTCGC GGTCGGGCCG ACGACGGTGG TGAACGGCGA CAACGGCGTG
GGCATCGGCA ACGGCGCGAT CGTCGACCAG ACCGCACCCG GCGGCGTCGC GATCGGGCAG
GCCGCGAGTT CCGCGCAGGC CGATGCGATC GCACTCGGCA GCGGTGCGTC GGCCCTCGGC
GCGCAGTCGG TCGCGCAGGG TGCCAATGCG TCGGCGGTCA GCGTGGGCAG CGTCGCGCTC
GGCTCGGGTG CGCACAGCAC CGCCACCGAT GCGCTCGCGC TCGGCGCCGG TGCGTCGGCG
ACGCTCGCGA ACAGCGTCGC GCTGGGCGCC GGTTCGCTGA CCACGGTCGG CGCGCTGACG
AACTACGTCG CGTACGGCCT GAGCAGCCCG CAGTCGTCGG CCGGTGAAAT CAATATCGGC
AACCGGCAGA TCACGGGTCT CGCCGCCGGC AAGAACGGCA CGGACGCGGT GAACGTGTCG
CAGCTCGACT CGGTCGCGAA CCAGTTGACG ACGCTGATTA CGCAACGCAC GACCAATCTC
GGCGGGCAGT ACACGACGAA CCCGCCGGGC GGCAACGTGC CGCCGGGGGC GAGCGGTTCG
AATTCGTCGG CGGGCGGTTC GGGGGCGGTC GCATCGGGCT CGAACAGCAC GGCGGTCGGC
AACAGTTCGA CGGCGTCCGG CAACGGCTCG ACGGCGATCG GCGTCGGCTC GATCGCATCG
GGCAACAACT CGACGGCGGT CGGCGCGGGC AGCAACGACG GCGGCCGCTC GAACGTCGTC
GCGGTCGGCT CCGCGGATTC GCCGCGCCAG GTCGTCAACG TCGCGGCGGG CACGCAGGGC
ACCGATGCGG TGAACGTGAA CCAGCTGAAT GCGGTCTCGA ACCAGTTCAC GCAGTCGCTG
AACACGGTCA ACAACCAGAT CTCGCAGATG CAGCAGCAGA TCCAGCAGAC CGATTCGATG
GCGCGTGAGG GGATTGCCGC GACGGCCGCG TTGGCGTCGA TTCCGCACAT GGACCGCGAC
TCGAACTTCG CGATGGGCGT CGGTACCGCG ACGTTCCAGG GTCAGAAGGC CATGGCCGTC
GGCGTGCAGG CGCGTCTCAC GGAGAACCTG AAGGCGACGC TGAACGGCGG CTTCGCAGGC
AGCCAGCGCG TCGTCGGCGC GGGCGTGCTG TATCAGTGGA AGTAA
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| Protein sequence | MNKSFKSIWN EALGAWVAAS ELDRARGKRV ASSRSASAHA ADACAVACIA TKPALSPRRL
VVMTAAAYLG LFQAGAHAQY SAGGGSATGG ASSTAIGNGS VASQVNATSY GNLSTAAGQS
STAIGPGARA MADGGTAIGI NSQATGFNSA ALGVQAISSG AFSVAIGNLS SATQSGAVAM
GSGAAATGVS AVGLGNNALA SGQYAAALGL GASAVGAQSV SLGYASNATN TGSVALGNQS
TSSGAAGVAV GSGTLASGNS GVAMGVNSGA KGTASIAIGW GGTAGVPGSG TQSLGSNSMA
MGSNTTASAN NAIAFGVNTV GSGVSSIAMG VQSSATQQFG LAFGNLALAT GVGGTALGAS
ATASQTNAFA AGTSSNATGV NAIALGTQAT SAATNAVALG AASSATDDGS VAIGASSSAG
NNTGTPTYRA TAVGAASQAT GQFSSAFGAS AAATGTAAVA IGDAANASAT NAIAMGSSAA
AASGNAVAIG TGATATGGAA VSIGAGNTAV GNGAVAIGDP SYASGTGAFT GGANNIANSD
GTASATVSNQ ANGAVAIGNN NKAIGQGSVA LGNASTAGAA GMAGNVALGD GATAATSAGD
VALGSGSVTA APNPTASATI GGVTYSFKGI NPTSVVSVGN VGTERQITNV AAGRISSTST
DAINGSQLDA TNQAVTSLST STLSSITSLS TSTSTGIGSL STGLSSTNSS VTSLSTSTST
GLSSANSAIT SLSTSTSTGI SSLSTGLSST NSAVTSLSTS TSTGIGSLST GLSATNSAIT
SLSTSTSTGL SSLSTGLSST NSTVTSLSTS TSTGIGSLST GLSATNSNLT SLSTATSTGI
GSLSTSLSSI VNNNTNLGNS TAGAIGGGST YDPTTGTISA PSYVTYNSDG STTINNNVGS
VVDNINAHGI KYFHANSTAP DSQAIGVDSV AIGPNAISLV NGSIALGSGS VADRPTAPSS
GIIRNGTAAI PFNTTDQTLL GAVSVGDTTN RTYRQITNVA DGTGQQDAVT VRQLTGALQS
FAVTGQKYFH ANSTAGDSLA VGAESVAVGP TTVVNGDNGV GIGNGAIVDQ TAPGGVAIGQ
AASSAQADAI ALGSGASALG AQSVAQGANA SAVSVGSVAL GSGAHSTATD ALALGAGASA
TLANSVALGA GSLTTVGALT NYVAYGLSSP QSSAGEINIG NRQITGLAAG KNGTDAVNVS
QLDSVANQLT TLITQRTTNL GGQYTTNPPG GNVPPGASGS NSSAGGSGAV ASGSNSTAVG
NSSTASGNGS TAIGVGSIAS GNNSTAVGAG SNDGGRSNVV AVGSADSPRQ VVNVAAGTQG
TDAVNVNQLN AVSNQFTQSL NTVNNQISQM QQQIQQTDSM AREGIAATAA LASIPHMDRD
SNFAMGVGTA TFQGQKAMAV GVQARLTENL KATLNGGFAG SQRVVGAGVL YQWK
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