| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5799 |
|---|
| Symbol | |
|---|
| ID | 6182049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 330534 |
|---|
| End bp | 331370 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641688934 |
|---|
| Product | shikimate dehydrogenase substrate binding subunit |
|---|
| Protein accession | YP_001815793 |
|---|
| Protein GI | 172065081 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCAC ATATCTCGGG CACAACGCGA CTCTATGGAC TAGTAGGCGA CCCACTGAGC
GCGGCGAAGT CGCCACAACT GCTGAACCGG CTGTTTATCG AGCAGTGCGC CGACGCGGTT
TGCGTTCCTT TCTGGGTCAA GGCAGACAAC CTGCCGGCCT TCGTCACCGG TGCACGTGCG
ATGAGCAATC TGTCTGGTCT GCTGGTCACG ATGCCTCACA AGCAACGGAT GCTCGCGCAT
GTCGACGAGC TGGATTCGAC TGCGCGCCAG GTCGGCGCGG TGAACGTCAT CCGCTGCGAA
GCAGATGGAC GCTGGGTCGG CGCAATATCT GATGGCGTCG GCTGCGTTCT TGGGATGCAG
TGGGAAGGCA ACCATCCGGC GAATAAGTCA GTGCTTCTTG TCGGCGCCGG GGGGGCAGGA
AGAGCTATCG CATTTGCAAT CGCATCCGCA GGCGCTAGCA GACTGATCAT ATCGGATGTC
GATGAGGACC GGTCCGACGA ACTGGCGGCA TCTGTTGCTG CTGAAACGGG CTGCAATACA
CGCCCGGGGC CACCCGATCC GCACGGGTTT GAGGTCGTAA TTAACGCCAC GCCGCTTGGC
ATGAAAGCGA ACGATCCGAT GCCCGTTGAT CCGGAGCGGC TCGCGCCCGG CGCCATCGTC
GTCGACATTG TGAATGCGGT GGAGCCGACG CCGCTTCGTC GGGCGGCGCA CGCGCGCGGG
TGCCGTACTC AGGACGGCGG TCCGATGCAT CAAGGGCAGG CGCTGTACGC ACTGCGCTTT
CTTGGATTCG ACTACCGCCC TGATGGCCGC CCAGCGCCGG GCGACGGCAT GCGATGA
|
|---|
| Protein sequence | MQSHISGTTR LYGLVGDPLS AAKSPQLLNR LFIEQCADAV CVPFWVKADN LPAFVTGARA
MSNLSGLLVT MPHKQRMLAH VDELDSTARQ VGAVNVIRCE ADGRWVGAIS DGVGCVLGMQ
WEGNHPANKS VLLVGAGGAG RAIAFAIASA GASRLIISDV DEDRSDELAA SVAAETGCNT
RPGPPDPHGF EVVINATPLG MKANDPMPVD PERLAPGAIV VDIVNAVEPT PLRRAAHARG
CRTQDGGPMH QGQALYALRF LGFDYRPDGR PAPGDGMR
|
|---|
| |