| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5644 |
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| Symbol | |
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| ID | 6182459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 149487 |
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| End bp | 150143 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641688776 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001815640 |
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| Protein GI | 172064928 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.552133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.103427 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCAGT TTAGCGATCT CACCGGGCTG CTGATCACCG TCGTCGCGAT CAGCCTGATC
CCGTTCGTCG CCATGGTCGC GACCTCGTAC GCGAAGATCG TGGTCGTGCT CGGGCTGTTG
CGCAACGCGC TAGGCGTGCA GCAGGTGCCG CCGAACATGG TGCTCAACGG CATCGCGGTC
CTCGTCTCCG CTTACGTGAT GGCGCCGATC GGCATGCAGG CCATGCAAAC CATGCAGACG
ATGCACCGTA CACCCGGCAG CGACACGTCG CTCGTCGTGC TCGATGCCTT CGATGCGGCA
AAGGAGCCGT TTCGCGCCTT TCTGAAGAAG CACGCGCACG AGCGCGAAAA GCGGTTCTTC
GTGCGCTCGG CAACCGTGGT CTGGCCGAAG GACATGGCGG CGAAGGTCCG TGAGGACGAC
CTCATCGTCC TCGCCCCGGC CTTCACGCTG ACCGAGATGG CCGACGCCTT CAAGATCGGC
TTTCTGCTGT ATATCGCATT CATCGTCGTC GATCTCGTCA TCGCCAACGT GCTGATGGCG
ATGGGCCTGA ACCAGGTCCA GCCGACGAAC GTCGCGATTC CGTTCAAGCT GCTCTTGTTC
GTCGTCATGA GCGGCTGGTC CACATTGATA CACGGTCTTG TCATGACCTA TCGCTGA
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| Protein sequence | MVQFSDLTGL LITVVAISLI PFVAMVATSY AKIVVVLGLL RNALGVQQVP PNMVLNGIAV
LVSAYVMAPI GMQAMQTMQT MHRTPGSDTS LVVLDAFDAA KEPFRAFLKK HAHEREKRFF
VRSATVVWPK DMAAKVREDD LIVLAPAFTL TEMADAFKIG FLLYIAFIVV DLVIANVLMA
MGLNQVQPTN VAIPFKLLLF VVMSGWSTLI HGLVMTYR
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