| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5617 |
|---|
| Symbol | |
|---|
| ID | 6182700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 117899 |
|---|
| End bp | 121354 |
|---|
| Gene Length | 3456 bp |
|---|
| Protein Length | 1151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641688749 |
|---|
| Product | TPR repeat-containing adenylate/guanylate cyclase |
|---|
| Protein accession | YP_001815613 |
|---|
| Protein GI | 172064901 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3899] Predicted ATPase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.413675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTGCA CACTATGCGG GTCCGAGAAT CCTCCCGGTG CGAGGTTCTG CCAGGAATGT
CAGGCCGTGC TGTCCCGCAC GTGCCCGCGA TGCGGACATG ACGCCGACCC CGCGGCCCGC
TTCTGCAGCA ATTGCGGAGC GTCGCTCGAG ACGACCGCTG CGGCGCCGCC ACCTTCACGG
CCATCGGCCC CCGAGCTCCC GCCGACTCCC GTTCATTACA CGCCGGATCA TCTTGCCGAG
CGGATCCGTG CCGAACACGC GGCCATGGAA GCGCGCGGCG AGCCCGCCGG CGAGCGCAAG
ACCGTGACCG CACTGTTTGC CGACATGGCC GGGTCGACCG CGTTGATCCA CGATCTCGAT
CCCGAAGTGG CGCATCGCCT GATCGTGCCC GTGGTCGAGC TGATGATGGA GGCGGTCCAT
TACTACGAAG GGTATGTAGC GAAATCGCTC GGCGACGGCA TCCTCGCGCT GTTCGGCGCA
CCGATCGCCC ACGAAGACCA TGCGCAGCGC GCGCTCTTCG CCGCGTTGCG CATGCAGCAG
GCGATGCGCC AGCATGGCGA TCGCATTCGT CTGCAGGAAG GCATTCCTCT GCAGATTCGC
GTCGGCGTTC ACACGGGCGA GGTCGTCGTC CGTTCGATCC GCACCGACGA TTTGCACACC
GAGTACGATC CGCTCGGACA TACGATCCAC ATCGCGTCGC GGATCGAGGG CATCGCGGCG
CCGACGTCGA TTCTCGTCAG CGAGTCGACC CACAAGCTGG CCGAGGGCTA TTTCGAATTC
AAGGCGCTGG GCGCGACGCA ACTCAAGGGA ATTCCCGCGC CGCTGTGCGT CTACGAGGTG
CTGGGCCTGG GCGCTTTGCG CACCCGCTTG CAACTGGCGG CGCACCGCGG CCTCGCGCGG
TTCGTCGGCC GCGAAACGGA AATGGAGCAC CTGAACCGTG CGCTGGACAC CATGCGGGCC
GGGCACGGGC GCGTGGTCGG CGTGGTGGGG GAAGCCGGCG TCGGCAAGTC GCGCCTGTTC
CACGAGTTCA AGGAGCGTTC GCGGCGTGGC GCGCTGGTGC TGGAGACGTT CTCGGTATCG
CACGGCAAGG CGTTTCCCAA TCTGCCGCTC ATCGAACTCC TGAAGAATTA TTTCCAGATC
ACGACCCAGG ACGACGAGCG GCGCTGCCGG GAAAAGGTCA TCGGCAAGGC GCTCACGCTC
GAGCGCAGTT TCGAGGAACT CGTGCCGTAC GTTCTCTATC TGCTGGGCAT CGGCGAAGGC
AGCCCGGTGC TCGCCGAGAT GGATCCGCAG ATCCGGCGCG AGCGCACCTT CGACGCGATC
AGGCAGCTGC TCGTGCGCGA GAGCCGGAAT CAACCGCTCC ATCTGCTGTT CGAGGATCTG
CAATGGCTCG ACCGCGAAAC GGAAGCCTTC CTCACGTATC TGATCGACCA CGTGCCGGAC
GCACGCATCC TGCTCCTGGT GAACTACCGG CCCGAGTATC GGCCCGCGTG GGCCGGCGCG
GCGCACTGGA GCACGCTGCG GCTCGAACCG CTGGGCCCGT CGGATGCGCA GGGATTGCTC
GCGGCGCTGC TCGGCGAGGA TCGCTCGCTC GTGCCGCTGA AGCAGCTCAT TCTGGAGAAG
ACGGAGGGCA ATCCGTTCTT CATGGAGGAA GTGGTCCAGA CGCTCGTCGA AGAGAAGTCG
CTGCTCGGCG AGGCCGGGCG TTATCGGATC GAGGAGACCC CGGCGACGCT GCACATACCC
ACCACCGTGC AGGGCGTGCT GGCTGCGCGG ATCGACCGGC TGCCGCTCGA CGAAAAGGAA
CTGCTGCAGG CGCTCGCCGT GATCGGCCAC GAGTTTCCGT TCAGCCTGAT CCGGCGGATT
TGCGGCGAGG CGCCGGCACG GGACGACGAA CTGCGGCGTC TGCTCGCGCA TCTGGAAGCG
GCGGAGTTCA TCTACGAGCG TCCCGCTTTC CCCGAAGTCA ATTATTCGTT CAAGCATGCG
CTGACCCAGG AAGTGGCCGG GCGCTCGTTG CTCACGGAGC GGCGTACCAC GCTGCACGAA
CGCACCGCGC AGGCGATCGA GATGCTGTTC CCGACGCGCA TCGCCGATTA CTGCAGCGAG
CTTGCGCACC ACTACAGCCA GAGCGGCAAC ATTCCGAAGG CGGTCGAATA CCTGCATCGT
GCGGCCCAGC AGGCGTTGCG CCATGCCGCC CATCACGATG CAATGAATCA CCTCGGCGCG
GCGCTGGCGT TGCTGAAGGG CTTGCCCGAC ACACCCGTGC GCGCGCATTG GGAGCTGACG
CTGCTGCTTT CGCTCGGGCC GGTCCTGATG GACGTGCGCG GGTATGGCGC GACGGAGGTG
GGCGCAATCT ATACGCGCGC GCTCGAGCTG TGCGAGCGGA CCGGCGAGGC ATCGCCGCGC
TTCGCGACGC AGCTGGGATT GCGGATGCAT CACGTGGTGC GCGGCGAGTA TGCGCTCGCG
ACCGAGCTGG GCAAGCAGAT GCTCGAAACG GCCCGGGACG CGAACGATCC GGGCTTCCTC
ATCGAGGCAC ATAGCGCACT GGGGTCGTGC TTCTTTCTGC AGGGCGAATT CGCTGCGGCT
CGCACGCACC TCGAACAGGC CCGTGCGATC TACGACCCGG AGCAGCATCA GGCGCACGTA
TTCGCGCACG GCGTGGATCC CGGCATCCGG GCGCTCAGCT TCCTCGTGCT GACCCTGTGG
ATTCAGGGGT ATCCCGACCA GGCGCTCGAA TGCAGCGTCG AAGCACTGGC GCTCGCGCGG
AGCCTTTCTT ACGGGCCTTC GCTGGCGTTC AGCCTGACCT ACACCGCGCA CTTGCACCAA
CTGCGGCGCG AGCCGCTGCT CGCCGCCGAG CGCGCGGACG CGGTCATCGC CGTATCGACC
GAGCACGGGT TGCCGTACTG GCTCGCTTGG GGAACGGTGC TGCGAGGCTG GGCGATGAGC
GCGCAGGGAA ACCTCGAGGA CGGCATCGCG CAGATGCGGC AGGGCCTCGA CGCGCAGCGG
GCAGCCGGCG GCGAGGACCA GCGTCCTTAC TCTCTCGCGT TGCTCGCCGA CAGTTACTGG
CGCGCGGGCG ACAAGCGCTC GGCACTGGGC ATGCTCGAAG AGGCGAGGGC GATCGTCGAG
CAATCCGGCG AGCATTGCTA CGAGGCCGAG GTGTACCGGC TCACCGGAAT CTATCTGGCT
GACGGCGCGG GCAACGAAGG CGCGGCACCC GAACGCGACG ACGAAGCCAT CGATTGCCTT
CACAAGGCGA TCGCGCGAGC GCGCCAGCAG GGTGCCAGGG CGCTGGAATT GCGGGCGGCG
TCAGACCTCG CCAGGCTGTT GCAACGACGG GGAAAGACCG TGGAGGCGAC GCAAGCGCTG
TCCGAGGTGT ACGCGTGGTT CACGGAAGGC TTCGACACGA GCGACCTGCG AGAGGCCAAG
GCGCTGCTGG ATACATTGGG CGCGCGCGCG GGATGA
|
|---|
| Protein sequence | MRCTLCGSEN PPGARFCQEC QAVLSRTCPR CGHDADPAAR FCSNCGASLE TTAAAPPPSR
PSAPELPPTP VHYTPDHLAE RIRAEHAAME ARGEPAGERK TVTALFADMA GSTALIHDLD
PEVAHRLIVP VVELMMEAVH YYEGYVAKSL GDGILALFGA PIAHEDHAQR ALFAALRMQQ
AMRQHGDRIR LQEGIPLQIR VGVHTGEVVV RSIRTDDLHT EYDPLGHTIH IASRIEGIAA
PTSILVSEST HKLAEGYFEF KALGATQLKG IPAPLCVYEV LGLGALRTRL QLAAHRGLAR
FVGRETEMEH LNRALDTMRA GHGRVVGVVG EAGVGKSRLF HEFKERSRRG ALVLETFSVS
HGKAFPNLPL IELLKNYFQI TTQDDERRCR EKVIGKALTL ERSFEELVPY VLYLLGIGEG
SPVLAEMDPQ IRRERTFDAI RQLLVRESRN QPLHLLFEDL QWLDRETEAF LTYLIDHVPD
ARILLLVNYR PEYRPAWAGA AHWSTLRLEP LGPSDAQGLL AALLGEDRSL VPLKQLILEK
TEGNPFFMEE VVQTLVEEKS LLGEAGRYRI EETPATLHIP TTVQGVLAAR IDRLPLDEKE
LLQALAVIGH EFPFSLIRRI CGEAPARDDE LRRLLAHLEA AEFIYERPAF PEVNYSFKHA
LTQEVAGRSL LTERRTTLHE RTAQAIEMLF PTRIADYCSE LAHHYSQSGN IPKAVEYLHR
AAQQALRHAA HHDAMNHLGA ALALLKGLPD TPVRAHWELT LLLSLGPVLM DVRGYGATEV
GAIYTRALEL CERTGEASPR FATQLGLRMH HVVRGEYALA TELGKQMLET ARDANDPGFL
IEAHSALGSC FFLQGEFAAA RTHLEQARAI YDPEQHQAHV FAHGVDPGIR ALSFLVLTLW
IQGYPDQALE CSVEALALAR SLSYGPSLAF SLTYTAHLHQ LRREPLLAAE RADAVIAVST
EHGLPYWLAW GTVLRGWAMS AQGNLEDGIA QMRQGLDAQR AAGGEDQRPY SLALLADSYW
RAGDKRSALG MLEEARAIVE QSGEHCYEAE VYRLTGIYLA DGAGNEGAAP ERDDEAIDCL
HKAIARARQQ GARALELRAA SDLARLLQRR GKTVEATQAL SEVYAWFTEG FDTSDLREAK
ALLDTLGARA G
|
|---|
| |