| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5523 |
|---|
| Symbol | |
|---|
| ID | 6182420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 11683 |
|---|
| End bp | 13338 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641688655 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001815519 |
|---|
| Protein GI | 172064807 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGACT TTTGCCGCGC GAACTTGCCC CCTGCCGAAG ATTGGCCGAC GTTTGTCTTT
GAGTTGCCGG GGCTGCAGTT TCCGCCGTTT CTCAATTGCG CCGCCGCGCT GCTGGATACC
GCGGTCGAAG AACGAGGCTG GGGCGATCGC ATTGCGATCA AGACCGAGTC GGGCATCGCG
TGGTCGTATC GCGAATTGCG CGATGCCGGC AACCGGATCG CCAACATGCT GGTCCGCGAT
GCGGGCCTGG TAGCCGGCAA TCGAGTGCTG TTACACGGCA CCAATCACCC GATGCTTGCC
GCCGCGTGGT TCGGCGTGGT CAAGGCCGGT GGCGTGGCCG TCGCGACGAT GCCGAAGCTG
CGCGCGGGAG AGCTGTCGAC CATCATCGCG CGAGCCCGGG TCACGCACGT GATCTGCGAA
GCCGGCCTGT CGACCGAGCT CGACGGGGCG ATGGCGAGCG TGCAGTGGCG CGGCGAAGTT
CGACGCTACG AGACGGACGA CACGCATCCG CACGCGCGCT GGCTCGATGG CTATTCAGCG
GAATTCGCGG CCGCCGACAC GCGCGCGGAC GATCCTTGCC TCATCGCGTT CACATCGGGG
ACGACCGGGG AACCGAAGGC AACCGTCCAT TTTCATCGCG ACGTGATGGC CGCCTGCCAC
TGCTTTCCGG AGCACGTGCT CCGGCCCACG GCCGATGACG TCTTCTGCGG GTCGCCGCCG
CTCGCGTTCA CGTTCGGCCT CGGCGCGCTG CTGCTGTTTC CGATCAGTGT CGGCGCGAGC
GTCGTGCTGT TGCCGAAAGC GAGCCCGGAA CGGCTGCTGG CCGCCGTCGA CCGGCATCGG
GTCAGCACCC TGTTTACGGC ACCGGCGGCC TATCGGTCCA TGCTCGACCA TCTCGACAGG
CATGACGTGT CGTCCCTGCG CAAATGCGTG TCGGCGGGTG AGGCGCTCCC GTCGTGGACG
CGCGACGCAT GGCAGGAGCG CACCGGCCTG CACCTGATCG ACGGAATCGG GTCGACCGAG
ATGCTGCATA TCTTCGCGTC GACAGGCGAC ACCGGCGCGA AGGACGGCGC AATAGGCAAG
GCAGTGCCCG GTTACCGCCT TGCCGTCGTG GACGAGCACG GCCAATGCCT GCCACCCTAT
GAAATCGGCT ATCTGGCCGT GCAGGGGCCG ACCGGGTGCC GCTACCTGAA TGACACGCGG
CAACGCGACT ACGTCAAGCA CGGCTGGAAC CTGACGGGCG ACAGCGCCTA CCTGGACGAG
GACGGCTATC TGTTCTATCA GGCGCGCGCG GACGACATGA TCATCAGCTC CGGCTACACG
GTGTCTCCCG GCGAAGTGGA GCAGGCGCTG CTGCGCCATC CCGATATCGC CGAATGCGGC
GTCGTCGGCC AGATCGACGA ACGGGGCGGC ACGCTCATCT GCGCGCACGT GGTGCTGCGA
CCTGGCGTCG ACGGCTCGGA AGCGTTGACG ATGCAACTGC AGCAGCACGT CAAGAGCGTG
ATTGCGCCGT ACAAATGTCC GCATCGTATT GCCTACCACG CCTGCAGTTT GCCGCGCAAC
GAATCGGGCA AATTGCGTCG CGCCGTGCTC CGGCAGGCGA GTCATGGCGT GACGCGTCCC
CTGAATCAAG CAGTCCAGAA CGAACACACC CTATGA
|
|---|
| Protein sequence | MDDFCRANLP PAEDWPTFVF ELPGLQFPPF LNCAAALLDT AVEERGWGDR IAIKTESGIA
WSYRELRDAG NRIANMLVRD AGLVAGNRVL LHGTNHPMLA AAWFGVVKAG GVAVATMPKL
RAGELSTIIA RARVTHVICE AGLSTELDGA MASVQWRGEV RRYETDDTHP HARWLDGYSA
EFAAADTRAD DPCLIAFTSG TTGEPKATVH FHRDVMAACH CFPEHVLRPT ADDVFCGSPP
LAFTFGLGAL LLFPISVGAS VVLLPKASPE RLLAAVDRHR VSTLFTAPAA YRSMLDHLDR
HDVSSLRKCV SAGEALPSWT RDAWQERTGL HLIDGIGSTE MLHIFASTGD TGAKDGAIGK
AVPGYRLAVV DEHGQCLPPY EIGYLAVQGP TGCRYLNDTR QRDYVKHGWN LTGDSAYLDE
DGYLFYQARA DDMIISSGYT VSPGEVEQAL LRHPDIAECG VVGQIDERGG TLICAHVVLR
PGVDGSEALT MQLQQHVKSV IAPYKCPHRI AYHACSLPRN ESGKLRRAVL RQASHGVTRP
LNQAVQNEHT L
|
|---|
| |