Gene BamMC406_6667 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6667 
Symbol 
ID6181708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010553 
Strand+ 
Start bp162652 
End bp163275 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content63% 
IMG OID641685415 
Productfimbrial protein 
Protein accessionYP_001812320 
Protein GI172064670 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0279989 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAGA AAGTTCTGAG TATTTCCATT GCTGCGCTGT TGGGTTTGAT TGCAGCACCG 
ATCGCATTTG CCGATCCCGT CGCCGAGGGG GGGGGCGGGG GCGGCGCCAC CGAAGCTGGT 
GGCACCGAAG GCGGCGGCAC AACGACTCCC GTGGCGGTCA CGCAAGGCAA GGTGACGTTC 
GACGGGGAAC TCACCACGAG CACGTGCTCG GTGCAGGCGG GGGATGAGGA CAAGAAGGTA 
TTGCTGCCGA AGATCTCGAC GGTCGATCTG GCGAAGAAGG CTGATACCGC CGGTTCGACG 
TCGTTCACGA TCGGCGTGTC GAATTGTGCG ACTGACGTGA AGGCCGTGGC CGCTCACTTC 
GAAATGACCA ATATGGATCC GGACACCGGC AACCTCAAGA ACCTGGCAGA GGCTGCGACG 
GCAGCGAAGA ACGTCACGGT CCAACTCGTG AACAGCGATG GCACGGGGGT GCGGGCCGGG 
ACGACAGGCC GCTTCTTCAA CGTGGCGGGC ACGGGCACCG AGCGCGGCGC GACGCTGATC 
TACGGCGGCC AGTACTACGC GACCGGCGAG ACCACGGCAG GTAAGGTGAA CAGCTTCGCT 
CGCTTCACGC TCGCCTATCA GTAA
 
Protein sequence
MKKKVLSISI AALLGLIAAP IAFADPVAEG GGGGGATEAG GTEGGGTTTP VAVTQGKVTF 
DGELTTSTCS VQAGDEDKKV LLPKISTVDL AKKADTAGST SFTIGVSNCA TDVKAVAAHF 
EMTNMDPDTG NLKNLAEAAT AAKNVTVQLV NSDGTGVRAG TTGRFFNVAG TGTERGATLI 
YGGQYYATGE TTAGKVNSFA RFTLAYQ