Gene BamMC406_6636 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6636 
Symbol 
ID6181783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010553 
Strand
Start bp128548 
End bp129096 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content55% 
IMG OID641685396 
Productfimbrial protein 
Protein accessionYP_001812301 
Protein GI172064651 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000143091 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000158442 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCTCTA AAAAAGTCAC TCTCCTCAGT GCAGCAGTGG GTGCCGCGTT CGTGGGTGTA 
TTTTCGCTTT CCGCGCCGGC GCACGCTGCG GACGGCACCA TTACATTCAA CGGAAAAGTC
ACAGCCGCTA CTTGTACGGT TCAGGCTGGA AAGGGCGATT TGACTGTGCA AATGCCTACT
GTTTCTGTCT CCGCCTTCAA AGCAGATGGT GACGTGGCTG GGAGTAAGCC TTTCACCATC
TCGTTCTCCG GATGTACGGG GGATGCTTCG ACGGTGAAGG TTGGTTTCGA GTCGGGGGCA
AACGTTGATC CGGTGACAGG GCGCCTAAAG CTTAACGGGG CCGATGCTGC TAAGAATCTC
CAGCTGGGCC TTTACAACGG TGACAGCTCG AAGATCACGA TCGGCGACAG TGCAACAGTA
AAGGGTGTGT CACTTGCTAG CGGTAGTGGC ACGGTGCTCT ATATGGCCAA GTATGTGCAG
ACGGGCGCCA CGGCTGTAAA GGCTGGTAAC GCCAATACCT CGGTGACGTA CTCCCTGATC
TACGAATAA
 
Protein sequence
MISKKVTLLS AAVGAAFVGV FSLSAPAHAA DGTITFNGKV TAATCTVQAG KGDLTVQMPT 
VSVSAFKADG DVAGSKPFTI SFSGCTGDAS TVKVGFESGA NVDPVTGRLK LNGADAAKNL
QLGLYNGDSS KITIGDSATV KGVSLASGSG TVLYMAKYVQ TGATAVKAGN ANTSVTYSLI
YE