| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5506 |
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| Symbol | |
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| ID | 6179758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2760139 |
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| End bp | 2760987 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641685261 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001812166 |
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| Protein GI | 172064515 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0194601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCGTTT CCAATCTCGT CGTGGACGAA CAAGAAACCG ACGCCGCTGC CGTCACATCG
GGCAGTTCTT TCTATTTGGC GATGCGCATC CTGCCGGCGG TGCAGCGCGA CGCGATGTTC
CAGGTCTACG CGTTCTGCCG CGCGGTCGAC GACATCGCCG ACAGCGACCT GCCGCGCGCC
GAGCGCAATG CGGGCCTCGA TCGCTGGCGC GCGGACATCG ACGCGTGCTT CGCCGGCCAG
CCGCCGCGCC ATCTGGTCGC GCTCGAGCGC GAGATTCGCG CGTTCGACCT GAAGCGCGAG
GATTTCCACG CGATGATCGA CGGAATGGCG ATGGACGCCG CCGAGGACAT CTGCGCGCCG
GACGAGCCGA CGCTCGACCT GTTCTGCGAT CGCGTGGCGA GCGCGGCCGG CCGTCTGTCG
GTGAGGATTT TCGGGATCCC GGAAGCGCAA GGCATCGCGC TGTCGCACCA CCTCGGCCGC
GCATTGCAGC TGACGAACAT CCTGCGCGAC ATCGACGACG ACGCGGCGAT CAACCGCTGC
TACCTGCCGC GCGAGCTGCT CGCGCGCGAA GGCATCGCGA TTATCGATCC GGCGACGATC
GTGCGCGATC CGGCGCTGCC GCGCGTCTGC GCGACGCTCG TCGAGCGCGC GCTCGAGCAT
TTCCGCGCGG CGGACGCCGT GATGGATACC TGCACGCGTG CGCAGGTGAA AGCGCCGCGC
ATCATGTCGG GCGCGTATCG CTGCATTCTG GAGGCCGCGA TCGCGCGCGG CTTCGCCGCG
CCGCGCGCGC CGCTGCGCAA GCCGAAGGCG CGCATGCTGA TGATCGCCGC GCGTTACGCG
CTGTTCTGA
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| Protein sequence | MAVSNLVVDE QETDAAAVTS GSSFYLAMRI LPAVQRDAMF QVYAFCRAVD DIADSDLPRA
ERNAGLDRWR ADIDACFAGQ PPRHLVALER EIRAFDLKRE DFHAMIDGMA MDAAEDICAP
DEPTLDLFCD RVASAAGRLS VRIFGIPEAQ GIALSHHLGR ALQLTNILRD IDDDAAINRC
YLPRELLARE GIAIIDPATI VRDPALPRVC ATLVERALEH FRAADAVMDT CTRAQVKAPR
IMSGAYRCIL EAAIARGFAA PRAPLRKPKA RMLMIAARYA LF
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