| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5463 |
|---|
| Symbol | |
|---|
| ID | 6180531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2705101 |
|---|
| End bp | 2706993 |
|---|
| Gene Length | 1893 bp |
|---|
| Protein Length | 630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641685218 |
|---|
| Product | feruloyl-CoA synthase |
|---|
| Protein accession | YP_001812123 |
|---|
| Protein GI | 172064472 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.498591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTAG CGACGCCCGC GAGCGGGCCG GTGAACGACA CGGGCGGCGT GCGCTATCGC
GCGGCGGCCG TCGCCGTCGG CGCGGCCGAG ATTCGCCGCG CGGAAAACGG CACGTGGTAC
CTGCGTTCGC GCGAACCGCT CGGCGATTAC CCGACGCGCC TGACCGACTG CCTCGTGCGC
GGCGCGCAAG CGCACCCGGA CCGCGTGCTG GCCGCGCGGC GCGGCGCCGA TGGCCGCTGG
ATCGAGATCA CCTACGCGCG GATGCTGGAG CGCGCTCGCG CGCTCGGCCA GGGCCTCGTC
GATCTCGGGC TGTCGGCCGA GCGTCCGCTC GCGGTGCTGT CCGGCAACGA TCTCGAGCAT
CTGCAACTGA TGTTCGCGGC CATGCTGGCC GGCGTGCCGT ACGCGCCGAT CTCGCCCGCG
TATTCGCTCG TGTCGACCGA CTACGGCAAG CTGCGCCACA CGCTCGGCGT GCTGCGCCCG
GGGGCGGTCT TCGTCGCCGA ACGCGCGCCG TTCATGCGTG CGCTCGACGC CACGTTGCCG
GCCGATGCGG CGCTGATCGT CGCACGCGAC GACGATGCCG GCGCGCACGG AAAGGGCCGC
GCGGTGCCGC TCTCGCGCTT GCTCGCGACG GCACCGCGCA CGATCGACGC GATCCATGCG
GCGATCGGCC CCGATCATCT CGCGAAGATC CTGTTCACGT CCGGTTCGAC GAAGCAGCCG
AAGGCGGTGC CGACCACGCA CCGGATGCTG TGCAGCAACC AGCAGATGCT GCGCCAGACG
ATGCCCGAGC TCACGCGCGA GCCGCCGGTG CTGGTCGACT GGCTGCCGTG GAATCACACG
TTCGGCGGCA GTCACAACCT CGGCATCGCG CTGTACAACG GCGGCACGCT GTACATCGAC
GACGGCCGCC CGATGCCGGG CCGCTTCGAC GAAACCGTGC GCAACCTGCG CGAGATCGCG
CCGACGATCT ACTTCAACGT GCCGAAGGGC TGGGAAGAGC TGACCGTCGC GCTCGAACGC
GATGCCGCGC TGCGCGACAC GTTCTTCTCG CGCGTGAAGC TGTATTTCTT CGGCGGCGCG
GGGCTGTCGC AGGCCGCGTG GGACCGGCTC GACCGCGTGA CCTACGCGCA TTGCGGCGAG
CGCATCCGGA TCATGGCTGG CCTCGGGATG ACGGAGGCGT CGCCGTCGTG CCTGTTCACC
ACGGGGCCGC TGATGCGTGC CGGCTACATC GGGCTGCCGG CGCCTGGCTG CGACGCGAAG
CTGGTGCCGT GCGGCGGCAA GCTCGAGCTG CGTTTCAAGG GGCCGAACGT GATGCGCGGC
TACTGGCACG CGGACGTCGA TCCGCGCGAC GTGTTCGACG AAGAAGGGTA TTACCGCAGC
GGCGACGCGG GGATCTTTGC CGATCCGCAG CGGCCGGAAC TCGGGTTGCA GTTCGACGGG
CGGCTGACCG AGGACTTCAA GCTGAGCAGC GGCACCTTCG TCAGCGTCGG GCCGTTGCGC
GCGAACGCGG TGTCGAGCGG CGCGCCGTAC GTGCAGGACG TGGTCGTCAC CGGGATCAAT
CGCGACGACA TCGGGCTGCT CGTGTTTCCG CGCGTCGACG CGTGCCGCGC GCTGGCGGGG
CTCGCCGCCG ACGCGCCGGT GTCCGACGTG CTGCGCGCGC CGGCCGTACG CGCGGCGTTC
ACGACGTGGC TTGCCGCGCT GAACCGGCAT GCCAGCGGTG GCTCGACGTT CGTCGCGCGC
ATCCGGTTGA TCGACACGCC GCCGTCGCTC GATCTCGGCG AAGTGACCGA CAAGGGTTCG
CTGAACCAGG CGGCCGTGCA GCAGCATCGC GCGGCGACGA TCGACGCGCT GTACGACCCG
GCGCGGCGCG ATCCCGACGT GATTTACGCG TAG
|
|---|
| Protein sequence | MKVATPASGP VNDTGGVRYR AAAVAVGAAE IRRAENGTWY LRSREPLGDY PTRLTDCLVR
GAQAHPDRVL AARRGADGRW IEITYARMLE RARALGQGLV DLGLSAERPL AVLSGNDLEH
LQLMFAAMLA GVPYAPISPA YSLVSTDYGK LRHTLGVLRP GAVFVAERAP FMRALDATLP
ADAALIVARD DDAGAHGKGR AVPLSRLLAT APRTIDAIHA AIGPDHLAKI LFTSGSTKQP
KAVPTTHRML CSNQQMLRQT MPELTREPPV LVDWLPWNHT FGGSHNLGIA LYNGGTLYID
DGRPMPGRFD ETVRNLREIA PTIYFNVPKG WEELTVALER DAALRDTFFS RVKLYFFGGA
GLSQAAWDRL DRVTYAHCGE RIRIMAGLGM TEASPSCLFT TGPLMRAGYI GLPAPGCDAK
LVPCGGKLEL RFKGPNVMRG YWHADVDPRD VFDEEGYYRS GDAGIFADPQ RPELGLQFDG
RLTEDFKLSS GTFVSVGPLR ANAVSSGAPY VQDVVVTGIN RDDIGLLVFP RVDACRALAG
LAADAPVSDV LRAPAVRAAF TTWLAALNRH ASGGSTFVAR IRLIDTPPSL DLGEVTDKGS
LNQAAVQQHR AATIDALYDP ARRDPDVIYA
|
|---|
| |