Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5390 |
Symbol | |
ID | 6181536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 2627353 |
End bp | 2629335 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641685145 |
Product | Fis family proprionate catabolism activator |
Protein accession | YP_001812050 |
Protein GI | 172064399 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.420192 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.577921 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCTCT CCTCGACCAA GCCCGTCGGC CCGGCTGACC GCACGGTGCG CCCGCGCATC TGGGCGATGG GCATCAGCCG CCTGCGCGAC CTGTTTCGCG AGATCGCCGG CGAATTCGAC GAACGCGCCG ACGTGCGCAT CGTCACACGG GCCTACGAAG ACGCGCTCAG CGCAATCGCG GAAGCCGGCA CCGCGCGGCC CGACGTGATC GTCGCGGCTG GCTCGAACGG CGGCTTCCTG AAAACGCGTG CGCAGGTGCC GGTCGTGGTC GTGTCGCCGA CCGGCTTCGA CGTGATGCAG GCGCTCGCGC GCGCACGGCG CGACGCCACC CGGATCGCCC TCGTCAGCGC CGGCGAGACG CCGCCGGAGG TGCGCCGCTT CGTCGCCGCC TACGGCCTCG ACGTGCAGTT TGCGTCATAT CAGTCCGCTC AGGAAGCGGA AGCCTGCGTG CTCGATCTGC ACGACCGCGG CATCGAGACG ATCGTCGGCC CCGGCCTCGT CACCGATCTC GCGGCGAGTG CCGGCATGGG CGCGGTGTTC CTGTATTCGC ACGCGTCGGT GCGCAAGGCG GTCGAAACGG CGCTCGAAGT CGCGTACGCG ACGCATGCCG AGGCGTTTCG CCGGCAGCGC CTCGACAACC TGTTGCAGCA CCTGCGCGAC GGGGTGGTCG CGCTCGACGC GCGTGGTCAC GTCGAGGCGA TCAACGAGCG GCTCGCGTCG GCGCTCGGGG TCGAACCGGC GGCGGCCGTC GGCCGCGCGC TCGTCGACCT GCGGCCCGAG CTGCGCACGC TGCGCGGCGA GGACGGCGAC GCGCTCGCGA CGGTGCGCGG CGTGCGCTAC GTCGTGCATC GCGGGCCGCT CGTCGATCGC GGCGTCACGT CGGGCAGCGT GCTGACCTTC CAGGAATCGC GCGCGGTCGA ACGGCTCGAC CGCGCGCTGC GTTCGCAGCC GAACACGCAG CAGTTCGCGG CGCGCTACGC GCTCGACGAC GTGGTCGGCG CGTCCGCGCC GATGGCGCGC GTGCGCGACC TCGTGCGCCG CTACGCGAAA TCCGACGCCA CCGTGCTCGT GCTCGGCGAA AGCGGCACCG GCAAGGAGAT GATCGCGCAG AGCCTGCACG CGCTGTCCGT GCGGCGCAGC TATCCGTTCG TCGCGATCAA CTGCGGCGCG TTTCCGGAAG CGCTGCTCGA GAGCGAGCTG TTCGGTTACG AGGAAGGCGC GTTCACCGGC GCGCGGCGCG GCGGCAAGAC CGGGCTGTTC GAGGCTGCAC ACCGCGGCAC GCTGTTTCTC GACGAGATCG GCGAGATGCC GCCGTCGCTG CAAAGCCGGC TGCTGCGCGT GCTGCAGGAG CGCGAGGTGA TCCGCCTCGG GTCGACCGAG CCGATCCGCA TCGACGTGCG CGTGATCGCC GCGACGCACC GGCCGCTGCT CGCGGCCGTC GAAGCCGGCA CGTTCCGCGC GGATCTGTAT TACCGGCTCA ACATCCTGAA CATCGGCCTG CCGCCGCTGC GCGAGCGTGC GGCCGACATT CCGGCGCTCG CGGCCACGCT GCTCGTGCAG GCCGCGCGGC GCGAGCCTCG GCTGGCCGAA CGCGTGCGCG AGGTCGGTGA TGCGATGCGC GTGTTCGGCG CGACGCAGGC GACGCTCGCC CGCTACCGCT GGCCCGGCAA CGTGCGGGAA CTGCAGAACG TGGTCGAGCG GATCGCGGTG GAACTGGCCG AGGAAGTCGA CGAGCAGGAT CCCGGCGCCC CGTGCGCCGC GCTCGCGCCC GATGCGCTGC AGGCGATCGC GCCGGAGTTG TTCGCGACAC CGCCCGAGGC CGCCGATCCC GACGACGCGC AGACGCTGCA AGCACGCCGC CGCCGCGCGG AAGCCGACGA GATCCGCGCG GTGCTCGATG CGTGCGGCGG CGACCGCGAT CGCGCGTGTG CGATGCTGGG CATCAGCAAG ACGACGCTGT GGCGGAAGCT GTCGGCGAAG TAG
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Protein sequence | MDLSSTKPVG PADRTVRPRI WAMGISRLRD LFREIAGEFD ERADVRIVTR AYEDALSAIA EAGTARPDVI VAAGSNGGFL KTRAQVPVVV VSPTGFDVMQ ALARARRDAT RIALVSAGET PPEVRRFVAA YGLDVQFASY QSAQEAEACV LDLHDRGIET IVGPGLVTDL AASAGMGAVF LYSHASVRKA VETALEVAYA THAEAFRRQR LDNLLQHLRD GVVALDARGH VEAINERLAS ALGVEPAAAV GRALVDLRPE LRTLRGEDGD ALATVRGVRY VVHRGPLVDR GVTSGSVLTF QESRAVERLD RALRSQPNTQ QFAARYALDD VVGASAPMAR VRDLVRRYAK SDATVLVLGE SGTGKEMIAQ SLHALSVRRS YPFVAINCGA FPEALLESEL FGYEEGAFTG ARRGGKTGLF EAAHRGTLFL DEIGEMPPSL QSRLLRVLQE REVIRLGSTE PIRIDVRVIA ATHRPLLAAV EAGTFRADLY YRLNILNIGL PPLRERAADI PALAATLLVQ AARREPRLAE RVREVGDAMR VFGATQATLA RYRWPGNVRE LQNVVERIAV ELAEEVDEQD PGAPCAALAP DALQAIAPEL FATPPEAADP DDAQTLQARR RRAEADEIRA VLDACGGDRD RACAMLGISK TTLWRKLSAK
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