Gene BamMC406_5390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5390 
Symbol 
ID6181536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2627353 
End bp2629335 
Gene Length1983 bp 
Protein Length660 aa 
Translation table11 
GC content72% 
IMG OID641685145 
ProductFis family proprionate catabolism activator 
Protein accessionYP_001812050 
Protein GI172064399 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR02329] propionate catabolism operon regulatory protein PrpR 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.420192 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.577921 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTCT CCTCGACCAA GCCCGTCGGC CCGGCTGACC GCACGGTGCG CCCGCGCATC 
TGGGCGATGG GCATCAGCCG CCTGCGCGAC CTGTTTCGCG AGATCGCCGG CGAATTCGAC
GAACGCGCCG ACGTGCGCAT CGTCACACGG GCCTACGAAG ACGCGCTCAG CGCAATCGCG
GAAGCCGGCA CCGCGCGGCC CGACGTGATC GTCGCGGCTG GCTCGAACGG CGGCTTCCTG
AAAACGCGTG CGCAGGTGCC GGTCGTGGTC GTGTCGCCGA CCGGCTTCGA CGTGATGCAG
GCGCTCGCGC GCGCACGGCG CGACGCCACC CGGATCGCCC TCGTCAGCGC CGGCGAGACG
CCGCCGGAGG TGCGCCGCTT CGTCGCCGCC TACGGCCTCG ACGTGCAGTT TGCGTCATAT
CAGTCCGCTC AGGAAGCGGA AGCCTGCGTG CTCGATCTGC ACGACCGCGG CATCGAGACG
ATCGTCGGCC CCGGCCTCGT CACCGATCTC GCGGCGAGTG CCGGCATGGG CGCGGTGTTC
CTGTATTCGC ACGCGTCGGT GCGCAAGGCG GTCGAAACGG CGCTCGAAGT CGCGTACGCG
ACGCATGCCG AGGCGTTTCG CCGGCAGCGC CTCGACAACC TGTTGCAGCA CCTGCGCGAC
GGGGTGGTCG CGCTCGACGC GCGTGGTCAC GTCGAGGCGA TCAACGAGCG GCTCGCGTCG
GCGCTCGGGG TCGAACCGGC GGCGGCCGTC GGCCGCGCGC TCGTCGACCT GCGGCCCGAG
CTGCGCACGC TGCGCGGCGA GGACGGCGAC GCGCTCGCGA CGGTGCGCGG CGTGCGCTAC
GTCGTGCATC GCGGGCCGCT CGTCGATCGC GGCGTCACGT CGGGCAGCGT GCTGACCTTC
CAGGAATCGC GCGCGGTCGA ACGGCTCGAC CGCGCGCTGC GTTCGCAGCC GAACACGCAG
CAGTTCGCGG CGCGCTACGC GCTCGACGAC GTGGTCGGCG CGTCCGCGCC GATGGCGCGC
GTGCGCGACC TCGTGCGCCG CTACGCGAAA TCCGACGCCA CCGTGCTCGT GCTCGGCGAA
AGCGGCACCG GCAAGGAGAT GATCGCGCAG AGCCTGCACG CGCTGTCCGT GCGGCGCAGC
TATCCGTTCG TCGCGATCAA CTGCGGCGCG TTTCCGGAAG CGCTGCTCGA GAGCGAGCTG
TTCGGTTACG AGGAAGGCGC GTTCACCGGC GCGCGGCGCG GCGGCAAGAC CGGGCTGTTC
GAGGCTGCAC ACCGCGGCAC GCTGTTTCTC GACGAGATCG GCGAGATGCC GCCGTCGCTG
CAAAGCCGGC TGCTGCGCGT GCTGCAGGAG CGCGAGGTGA TCCGCCTCGG GTCGACCGAG
CCGATCCGCA TCGACGTGCG CGTGATCGCC GCGACGCACC GGCCGCTGCT CGCGGCCGTC
GAAGCCGGCA CGTTCCGCGC GGATCTGTAT TACCGGCTCA ACATCCTGAA CATCGGCCTG
CCGCCGCTGC GCGAGCGTGC GGCCGACATT CCGGCGCTCG CGGCCACGCT GCTCGTGCAG
GCCGCGCGGC GCGAGCCTCG GCTGGCCGAA CGCGTGCGCG AGGTCGGTGA TGCGATGCGC
GTGTTCGGCG CGACGCAGGC GACGCTCGCC CGCTACCGCT GGCCCGGCAA CGTGCGGGAA
CTGCAGAACG TGGTCGAGCG GATCGCGGTG GAACTGGCCG AGGAAGTCGA CGAGCAGGAT
CCCGGCGCCC CGTGCGCCGC GCTCGCGCCC GATGCGCTGC AGGCGATCGC GCCGGAGTTG
TTCGCGACAC CGCCCGAGGC CGCCGATCCC GACGACGCGC AGACGCTGCA AGCACGCCGC
CGCCGCGCGG AAGCCGACGA GATCCGCGCG GTGCTCGATG CGTGCGGCGG CGACCGCGAT
CGCGCGTGTG CGATGCTGGG CATCAGCAAG ACGACGCTGT GGCGGAAGCT GTCGGCGAAG
TAG
 
Protein sequence
MDLSSTKPVG PADRTVRPRI WAMGISRLRD LFREIAGEFD ERADVRIVTR AYEDALSAIA 
EAGTARPDVI VAAGSNGGFL KTRAQVPVVV VSPTGFDVMQ ALARARRDAT RIALVSAGET
PPEVRRFVAA YGLDVQFASY QSAQEAEACV LDLHDRGIET IVGPGLVTDL AASAGMGAVF
LYSHASVRKA VETALEVAYA THAEAFRRQR LDNLLQHLRD GVVALDARGH VEAINERLAS
ALGVEPAAAV GRALVDLRPE LRTLRGEDGD ALATVRGVRY VVHRGPLVDR GVTSGSVLTF
QESRAVERLD RALRSQPNTQ QFAARYALDD VVGASAPMAR VRDLVRRYAK SDATVLVLGE
SGTGKEMIAQ SLHALSVRRS YPFVAINCGA FPEALLESEL FGYEEGAFTG ARRGGKTGLF
EAAHRGTLFL DEIGEMPPSL QSRLLRVLQE REVIRLGSTE PIRIDVRVIA ATHRPLLAAV
EAGTFRADLY YRLNILNIGL PPLRERAADI PALAATLLVQ AARREPRLAE RVREVGDAMR
VFGATQATLA RYRWPGNVRE LQNVVERIAV ELAEEVDEQD PGAPCAALAP DALQAIAPEL
FATPPEAADP DDAQTLQARR RRAEADEIRA VLDACGGDRD RACAMLGISK TTLWRKLSAK