| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5277 |
|---|
| Symbol | |
|---|
| ID | 6179563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 2494837 |
|---|
| End bp | 2496219 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641685032 |
|---|
| Product | PqiA family integral membrane protein |
|---|
| Protein accession | YP_001811937 |
|---|
| Protein GI | 172064286 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2995] Uncharacterized paraquat-inducible protein A |
|---|
| TIGRFAM ID | [TIGR00155] integral membrane protein, PqiA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.340363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCG AAAACCTGGT CGCCTGCCAC GAATGCGACC TGCTGTTTTG GCGGCCACCG
CGCCTGCGCG CGCTGGCCGC GCACTGCCCG AGGTGCCGTG CCCGCGTGGG CGGCAGCGCG
CACGGCCGTC CGGCGCTGGA CCGGCGGTGC GCGATCGCGC TCGCCGCGCT GTTCACGTTG
TTCATCGCGC AGGCCTTTCC CATCGTCGCG CTCGACGCAG CCGGCATCGC ATCGCACGCG
ACGGTGGCCG ACGCGGTGGC CGCGTTGCGC TTGCACGGGC AACCAGCCGT GGCGGCGATC
GTGTTCTGCA CGACGATGTT GTTCCCGCTG CTGGAACTCG CCGCGTGGCT GTACGTGCTC
GTACCGTTGC GCGCGGGCCG CGTACCGCCC TGCTTCGCGC CGGTCCTGCG CAACATGCAG
CGGCTGCGTC CATGGAGCAT GGTCGAGGTG TTCCTGCTCG GCATCCTGGT CACGATCGTC
AAGATGACGA GCGTCGCGCA CGTGATACCG GGCCCCGCGC TGTTTGCGTT CGGCGCCCTC
ACCGTGATGC TCGGCGTTCT CGCGTCGTTC GACCCGGGCG GCCTGTGGGA AGCACGCGAC
GAAATCAGCG CGCTGCACGA CGGCGGTATG TCTGCCGCGG TGTCGCGCCG GCGGCACACG
CCGCGACGCG CTGCACCGGT GGCGCCCGAC ACAGCAGACG CAATGGACGC TACGGACGCG
ACCAGCGCGA CCAGGCACCA CCGCCCGGCA AGCGTCACGG CCCGCGCCGC GGGGCTGCTC
GCATGTCATA CCTGCGGACG CGTACAGCAG CCGCATATCG AGGCCGCCGG CGCGCGCTGC
ACGCGCTGCG GGTCGACGCT GCACGAACGC CGCCCGCGCA GCGCCGCACG CACGGGCGCG
CTCGTGATCG CGGCCGCGCT TCTCTACATT CCGGCGAACC TGCTGCCCAT CATGCACGCG
ACATCGCTCG GCCGCACCGA GGACGACACC ATTCTCGCCG GCGTCGCGTA CTTCTGGACG
TCCGGCGACT GGCCGCTCGC CGTCGTGGTG TTCGTCGCGA GCGTGCTCGT GCCGATGCTC
AAGCTCGCGA TTCTCGCGTT GCAGGCCATT GCCGCACATC GCGGCACGCC ATGGCGCCCG
CTGGAACGCG CGCGGCTCCA TCGACTGGTG GAGCGCGTGG GCCGCTGGTC GATGCTCGAC
GTGTTCGTCG TCGCGCTGAC GATCGCGCTC GTGCATTTCG GGTCGTTCGC CGAGATCACG
CCCGGCCCCG GCACGCTGGC GTTCGGCGCC GTGGTCGTAC TCACCATGTG CGCGTCGATG
CAGTTCGATC CGCGACTCAT CTGGGACGGC GTGCACCGCC CCGCCGCCAG CACTCGATCC
TGA
|
|---|
| Protein sequence | MKPENLVACH ECDLLFWRPP RLRALAAHCP RCRARVGGSA HGRPALDRRC AIALAALFTL
FIAQAFPIVA LDAAGIASHA TVADAVAALR LHGQPAVAAI VFCTTMLFPL LELAAWLYVL
VPLRAGRVPP CFAPVLRNMQ RLRPWSMVEV FLLGILVTIV KMTSVAHVIP GPALFAFGAL
TVMLGVLASF DPGGLWEARD EISALHDGGM SAAVSRRRHT PRRAAPVAPD TADAMDATDA
TSATRHHRPA SVTARAAGLL ACHTCGRVQQ PHIEAAGARC TRCGSTLHER RPRSAARTGA
LVIAAALLYI PANLLPIMHA TSLGRTEDDT ILAGVAYFWT SGDWPLAVVV FVASVLVPML
KLAILALQAI AAHRGTPWRP LERARLHRLV ERVGRWSMLD VFVVALTIAL VHFGSFAEIT
PGPGTLAFGA VVVLTMCASM QFDPRLIWDG VHRPAASTRS
|
|---|
| |