| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5158 |
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| Symbol | |
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| ID | 6179765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2339047 |
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| End bp | 2343651 |
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| Gene Length | 4605 bp |
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| Protein Length | 1534 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641684909 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_001811819 |
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| Protein GI | 172064168 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.316127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.475522 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAAAA TTACGGGAAG AGAGGAAATA TTTAAGGGTT TGAATTTGGG CGAGGATGTG
ATTGGTTTGA TAAATAAAAG CCAAACTCTA GTTGATCAGA TTCATAAATA TAATAAAGAT
GTTTTGGCTG AGAATGTTCG GCCAATTGAG GTTGATGTCG ATAGGGTAGG GATTTTCTGG
AGCTCCATTG AGAAAGGTAT TTATCTTGGG CGCTACGGAG ATGCAGGGTA TGAGGCACTT
GATCCGCGCG TCTTTGTCGG TATATTGAGT CATGAGCTTG GTCACTACAT TAATGATGCG
CGTGATAAAG CGAGGGAGCA GTTTTATGCG GATAAGGTGC GGGATAATTA CGATATTGCT
GCTTTTGTCG GAATAACAAA GGAGGCGGAG GCGGCCTACA ATAATTGGAA AATCGCACGG
GAAATATACG AGAATAACAG ATCGTTGATC TCCGTGCTTG GCGATCGTCC CGACTATGTG
TCGGCGCCCG GCTATGACAT CTATCACATG CTTACTAAAG TTTACGACGC GAACGTCGGA
AAGATGTCGG CGGATATGTT AGAAAAGGCA ATGATGGAGG TTGCCGGAAG CTATCTTGCT
CAGGCGAGTC CCGGAGCGAA TTTGAACGTC AACTACTATG AGTATTACGG ATCGGCTTAT
GGTGCGTCAC CAAAGCGCTT GTCCCACGCT CCCGTTGCTG CAGTTGATTA CTCGGTAGAT
TTCGAGACGG GACTGATGAA GTCAGTGACG TTGCATTTCT CCACCGGCAT GCGGCAGACA
AATCAATATG ATCGCGGGTT GCTGAGCACA GCAGCGTTAT GTGGTCCAAA CGGACAGATT
GTCGAATATG CGCGATATGC GGCTAACGGC TTGAAGACTG AGGAAATCAT CTACGATTCC
ATCGGGAACG GAACGATCAC CCGAACCGAC ACCAACGGCG ATGGCGTATT CGACCATGTC
AAGAAAGAAA CCCGCCTCGC CGACGGCGCC AGCGTAATCC GCGAAGACAC CAACGGCGAT
GGCGTTGCGG ACCGCAATTT CATCGTGAAC GGCGGCCAGC GTTACGACTT GTCCAACGTC
CGCGATGCCG CCTTTGCCGA CAGCCTGCTG TCGCGCTATC GTGCCTCCGG CCTACTGAGC
GGCACGAGCT ATCTGGATCT GAGCCAGGTC ATTTCCCGGA CGCTGACCTA CGGCGGGAAG
AATGATTACG GCTTCACGAT GCCATCCGGC TGGTACAACC CGATCGGCGC GTTCTACGAA
GCGAAAAGCC TCGAACTCGA CACCGCGGCG TCGATCGCGA ACAAGACTCC GGTGTTGCTC
AATGCACAGC GACAAGGTTT GAGTGCTGAA ACACTGCGCT CGCTCGATAC CAACCGCGAC
GGCAAATTGT CCGGTGCGGA ACTCAATGGC CTGCAGGTCT GGGTCGATAT GAACGAGGAC
GGCATCGCGG ATGCCGGCGA ATTCCGCGCG CTCCATCACG CAGGTATTTC CGAAATTCGT
GCCGTCGATT TCGACATCGT AACTCGTGGC AACAGCCGAT ATGCGAACGG CCCAGACACC
GCGCCGCTCA AGGGCAGCGA GGTCGCGGGC CAGCCAGGGC GCATCTATCT CGCCCCGGCT
GTTCCCTTCT CCAATTACCG TGCGCTGCGC GACACCGACA ACACGTACTG GATCAATTCC
AGTCAGTTCA TCCACTTCGG TGCGCGTCAG ATCAAGATCA ACAACGGCAA TCGAACCTAT
CTCATCGGAA CCGACGGAAA CGACGTATTC GACGCGAACT ACTACGCCGC GTACGGCCAC
TGGATCAACA GCGGTTTGCT CGTAAACTTC CTCGCCGGCG GCGGTGACGA TGTAATGGGC
GGCAGCTGGC GCAACGACAA TCTGTGGGGC GGCACCGGCA ACGACACGCT ATTCGGCTAC
GACGGCGACG ATCGGTTGTA CGGCGAAGAA GGCGACGACG AGTTGCAGGG TGGTGCAGGC
AACGACGTGC TCGATGGGGG CTCCGGAAAC GATTCGCTGT TTGGCCAGGC CGGCAACGAC
ATCATGAACG GCGGCGATGG CGACGACATC ATGATGGGCT TCACCGCATC CAACGAAGCG
AAGCAGGCAC TCGCACCGGG AGAAACGGAC GACGACGTCA TGTACGGTGG TGCGGGCAAC
GATCGGATGT GGGGCGGCCT CGGCAACGAC TACATGGACG GCGGCGACGG TGCAGATCTC
GTCAGAGGCG GTCACGGAAA CGACACGATA TTCGGTGGTA CCGGCAACGA CGAATTGCAC
GGCGACGAAG GCAACGACCG ACTTCTCGGC GAAGCCGGTC ACGACCGGAT ATTCGGTGAA
GCGGGCGACG ACGTGATCTG GGGCGGCGAT GGTGACGACG TACTGGTCGG CTTTACCGCC
GACAACGATG CGAAGCAAAC GTTGTCGTGG GGCGAGACCG ACAACGACGC GCTATACGGC
GGAAACGGAA ACGATGCATT GTATGGCGGT CTTGGCAACG ACTACCTCGA TGGCGGCAAC
GACGACGACT TCCTCGACGG CGGAGAAGGC GACGACACGC TCTTTGGCGG CGCCGGCAGC
GACGAGTTGA ATGGCGGTAA CGGCAACGAC GTCCTGTCGG GGGAAACCGG CAACGACAAG
ATTTTCGGCG GCGCGGGCAA TGACACGATC TGGGGCGGTG ATGGTGACGA CATTCTCGTC
GGCTTCACCG CCACCAATGA TGCGAAGCAG TCTCTCGCCG CATGGGAAAC CGACGACGAC
ACGATCTACG GTGGCGCCGG CAACGACCTG ATTCTCGGCG GCCTCGGCAA CGATCTGCTC
TATGGCGAGG CAGGCAACGA CGAAATTCAA GGCGGAGCCG GCCACGACCG GCTGTACGGC
GGAGACGGCA ACGATCGCCT GTTCGGTCAA GTCGGCAACG ACATCCTGTA TGGCGGCGCG
GGCGACGATC TGCTGGTCGG CTTCACCGGC GACAACGAGG AGAAGAGGAC GCTGGCTCCG
GGCGAGACGG ACGACGACTA TCTCTACGGC GGAGACGGCA GGGATACGCT GCTCGGCGGT
CTCGGGAACG ACTATCTCGA TGGCGGCGCT GGTGCGGATC ACATGGAAGG CGGGCAGGGT
AACGACACCT ATATCGTCAA CAGCGTCAAC GACGTGATTC TCGAGTACGC GAATGAAGGT
TACGACACGG TGATCAGCAG CGCGAACTAC ATCCTCAATG CCAACATCGA GGAATTGCGC
CTCGTCGAAG GATTCGACAT CAACGGCACG GGGAATGCGC TCGATAACGT GATCGTAGGC
AACAGCGCGG ACAACATCCT GGACGGTGTG ACGGGCGCCG ACACGATGAT CGGCGGCAAG
GGCAATGACA CCTACTACGT CGACAACGTT GGCGATCGTG TGGTGGAACG GGCGGGCGAA
GGGATCGATA CGGTTCAGAG CAAAATCAGC TACGCGCTGG GCGACCATGT CGAGAACCTG
AATCTGCTCG ATTTCGGCAA ACCGGAAAAG GGTCTCGTCG ATGGCACGTC CGTACTGGTA
TACGGTTACC CGAAGGCGAA CGAACTGGAT TACATGCAGG GCGACGCGGT TCCGACGTTC
CAGGGAACGT GCGCGCTGAC GTCGATCGCC AATCTGCTTA CACAGATCGG GACGCCGACC
ACGGAGGGGG AGGTGGTCAG GCGCGCGATC AACAACCAAT GGGCGATCAC CAGCCCGGCC
GCGACCGACT ATCAGCGAGG CGGATCGAAC TACGTCCAGC AACAGGCGCT CCTGAAAAGC
TACGGCATTA CGAACAATCT GCTCGCGGGA TACGACGAGC ATGCGGTCGC GAATCTGGTT
CGAAGCGGTC GGGGTGTGAT TCTCGCGCTG AACGCCGGTC GGCTCTGGGG AGATGGTGCG
TATCTCGACA GCGGCGGCGT CAATCACGTC GTTACGGTGA CCGGCGCGGT ATATGGCGAG
GCAGACGGTG TGCTCAAAGG CTTCTACATT GCCGATTCGG GGCGTCAACG CGTCAGCGAC
ATGACCCGTT ACGTGAGCCT TCAGGAGTTC AGGTCGGCGG CTAACGTACC GAACTCGTAT
GCGATTTACA CGGCCGAAGC GCTGAAACTG TGGAATGAGG ACATAGACGG CACGGGTAAC
GCACTCGACA ACACGATCAT CGGCAATCGC GGCAACAACG TGCTGGATGG TGGTGCCGGC
AACGACATCC TGGTCGGCGG CTTGGGCAAC GATACCTATC GATTTGGCCG CGGGGCCGGC
CGCGACACGA TTCAGGACGA CGACGAAACG CTCGGCAACA ACGATGTCAT CAGCATCGGG
GCTGGTGTAT CCGCGGATCA ATTGTGGTTC CGTCACGTCG GCAATGATCT CGAGATTAGT
ATCCTCGGCT CCAGCGATAC CGCGACGGTT CGGGACTGGT ACTCGGGATC GCGCTATCAG
ATCGAGCAGA TCCGCCTGGA CGACGGTCGG ACGCTCGTCA ACGCCGATGT CGAGAAGCTG
GTGCAGGCCA TGGCGGCATG GTCGCCGCCG GGTGCCGGGT CGGTCACGCT GTCTCCCGAG
CATCAGGCCG CGCTTGCGCC GACGCTGGCG ACGAGCTGGC GTTAA
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| Protein sequence | MSKITGREEI FKGLNLGEDV IGLINKSQTL VDQIHKYNKD VLAENVRPIE VDVDRVGIFW
SSIEKGIYLG RYGDAGYEAL DPRVFVGILS HELGHYINDA RDKAREQFYA DKVRDNYDIA
AFVGITKEAE AAYNNWKIAR EIYENNRSLI SVLGDRPDYV SAPGYDIYHM LTKVYDANVG
KMSADMLEKA MMEVAGSYLA QASPGANLNV NYYEYYGSAY GASPKRLSHA PVAAVDYSVD
FETGLMKSVT LHFSTGMRQT NQYDRGLLST AALCGPNGQI VEYARYAANG LKTEEIIYDS
IGNGTITRTD TNGDGVFDHV KKETRLADGA SVIREDTNGD GVADRNFIVN GGQRYDLSNV
RDAAFADSLL SRYRASGLLS GTSYLDLSQV ISRTLTYGGK NDYGFTMPSG WYNPIGAFYE
AKSLELDTAA SIANKTPVLL NAQRQGLSAE TLRSLDTNRD GKLSGAELNG LQVWVDMNED
GIADAGEFRA LHHAGISEIR AVDFDIVTRG NSRYANGPDT APLKGSEVAG QPGRIYLAPA
VPFSNYRALR DTDNTYWINS SQFIHFGARQ IKINNGNRTY LIGTDGNDVF DANYYAAYGH
WINSGLLVNF LAGGGDDVMG GSWRNDNLWG GTGNDTLFGY DGDDRLYGEE GDDELQGGAG
NDVLDGGSGN DSLFGQAGND IMNGGDGDDI MMGFTASNEA KQALAPGETD DDVMYGGAGN
DRMWGGLGND YMDGGDGADL VRGGHGNDTI FGGTGNDELH GDEGNDRLLG EAGHDRIFGE
AGDDVIWGGD GDDVLVGFTA DNDAKQTLSW GETDNDALYG GNGNDALYGG LGNDYLDGGN
DDDFLDGGEG DDTLFGGAGS DELNGGNGND VLSGETGNDK IFGGAGNDTI WGGDGDDILV
GFTATNDAKQ SLAAWETDDD TIYGGAGNDL ILGGLGNDLL YGEAGNDEIQ GGAGHDRLYG
GDGNDRLFGQ VGNDILYGGA GDDLLVGFTG DNEEKRTLAP GETDDDYLYG GDGRDTLLGG
LGNDYLDGGA GADHMEGGQG NDTYIVNSVN DVILEYANEG YDTVISSANY ILNANIEELR
LVEGFDINGT GNALDNVIVG NSADNILDGV TGADTMIGGK GNDTYYVDNV GDRVVERAGE
GIDTVQSKIS YALGDHVENL NLLDFGKPEK GLVDGTSVLV YGYPKANELD YMQGDAVPTF
QGTCALTSIA NLLTQIGTPT TEGEVVRRAI NNQWAITSPA ATDYQRGGSN YVQQQALLKS
YGITNNLLAG YDEHAVANLV RSGRGVILAL NAGRLWGDGA YLDSGGVNHV VTVTGAVYGE
ADGVLKGFYI ADSGRQRVSD MTRYVSLQEF RSAANVPNSY AIYTAEALKL WNEDIDGTGN
ALDNTIIGNR GNNVLDGGAG NDILVGGLGN DTYRFGRGAG RDTIQDDDET LGNNDVISIG
AGVSADQLWF RHVGNDLEIS ILGSSDTATV RDWYSGSRYQ IEQIRLDDGR TLVNADVEKL
VQAMAAWSPP GAGSVTLSPE HQAALAPTLA TSWR
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