| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5156 |
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| Symbol | |
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| ID | 6179840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2335417 |
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| End bp | 2336760 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641684907 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001811817 |
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| Protein GI | 172064166 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.540903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.68595 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGC GACAGCAGGC AGAGGCCTGG CGTGAACTGG TCGGGCGTTA TCGCGATGTC
TGGCGTCACT GCTGGAAGCG GCGTCATCGG ATGACGCTGC CGGCATTCAG CGCAAACGAG
GCCGAATTTC TGCCGGCGGC GCTGTCCGTC CAGGCGGTAC CTGTCTCGCC GGCAGGCCGG
TGGGTCGCGC GCATTCTCAT CCTGCTCGTG ATGACGGCGA TCGTCTGGTC GTATTTCGGG
AAAATCGACA TTGTTGTAGA CGGCGGCGGC AAGATCATTC CATCTTCCCG GACCAAGACA
TTGGCGGCGG TCGAAGTGGC GAGCGTCAGG GCGCTGCACG TGCGCGACGG GCAGATCGTG
AAGACTGGCG ATGCGCTGAT CGATCTCGAC ACACGCGTGA TCGACGCTGA ACGTCAACGG
GCGGACGGCG ACCGGCTGAA TGCGGTACTG CAAGTCGAGC GTGCACGGGC GCTGATCGAC
GCGATCGACA CGGGGCGCCA ACCTAGACTG GCGGATGTGG AGGGCGTGTC GCCCGAGCGA
CGGCGCGAGG TCGAGCGACA CCTGCTGGAT CAATGGCGCG ATTTCGTTGC ACGGCGGGAC
CGTCTCGACA GCGAAATCCA CAGATACGGT CAGGCCGCTC CGCTTGCGGC GCGTCGTGCG
GACGATTACG CCAAGTTGAT GAAGACCCGT GACGTTGCGG AGCACGCGTG GATCGAGGCC
GAGCAGCAGC GTATCGATAC GGCGGGACAG CTTGCGGATG CTCGTCACCA ACGCGCAGCG
CTCGTGGCAG AGACGCGAAG GAATGCCCAG GATGCGTTGA ACGATGCGCA GCGTATCGTG
GACGCGTCGT CGGGCGACAT GCGGCGTGCG GAGGCGCACG GGGAATTGCT GCGCCTGACC
GCGCCGATCG ACGGAACCGT CCAGCAGCTT GCAGTCCACA CGATCGGCAC AGCGGTACCG
GCTGCGCAGC CGCTGATGCA GATCGTGCCG CGCGAGGGGG CGGTCGAAAT GGAAGCGTTC
GTCGACAACA GGGATATCGG CTTCGTCAAG GAAGGGCAGG CCGCCAGCGT GAAGATTGAC
GCATTCGAGT ACACGAAATA CGGCACGTTG TCGGCGACCG TGCGTCATGT CTCACGCGAT
GCGATAGACG ACGAAAAGAA GGGACTCGTC TATTCGGTCA GGATCATGCT TGATCGTTCG
ACGCTGGTAG TAGACGGTCG CGAGATCGCA CTGTCGCCGG GTATGTCGGG TAGTGCCGAG
ATCAGAACCG GTACGCGGCG GGTGATCGAA TATGTGCTGT CGCCCTTGCT GCAGCATACG
CGGGAGAGTT TGCGTGAGCG ATAA
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| Protein sequence | MSMRQQAEAW RELVGRYRDV WRHCWKRRHR MTLPAFSANE AEFLPAALSV QAVPVSPAGR
WVARILILLV MTAIVWSYFG KIDIVVDGGG KIIPSSRTKT LAAVEVASVR ALHVRDGQIV
KTGDALIDLD TRVIDAERQR ADGDRLNAVL QVERARALID AIDTGRQPRL ADVEGVSPER
RREVERHLLD QWRDFVARRD RLDSEIHRYG QAAPLAARRA DDYAKLMKTR DVAEHAWIEA
EQQRIDTAGQ LADARHQRAA LVAETRRNAQ DALNDAQRIV DASSGDMRRA EAHGELLRLT
APIDGTVQQL AVHTIGTAVP AAQPLMQIVP REGAVEMEAF VDNRDIGFVK EGQAASVKID
AFEYTKYGTL SATVRHVSRD AIDDEKKGLV YSVRIMLDRS TLVVDGREIA LSPGMSGSAE
IRTGTRRVIE YVLSPLLQHT RESLRER
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