| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4753 |
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| Symbol | |
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| ID | 6179632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1888056 |
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| End bp | 1890260 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641684512 |
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| Product | type III secretion FHIPEP protein |
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| Protein accession | YP_001811423 |
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| Protein GI | 172063772 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.936418 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAAC CGAAGGCGCT CCCTCGCGAC TGGCAGCGGA TCTTTTCCGC CGGCCGCAGC
GTGTCCGGGC GGCGCCTCGG GGCGTCGCCG CGCGCCGACC TGTTTCTCGC CGGCTTCATC
GTGTCGGTGG TCGCGCTGTT CATCCTGCCG CTGCCGCAGG CCGCGCTCGA CGGGATGATC
TCGCTGAACC TCGCGGCGAG CGTCGTGCTG CTGACGGTGT CGACCTACGT GCCGTCGGCG
GTCAGCTTTT CGTCGTTTCC CGCGCTGCTG CTGTTCACCA CGCTGTTCCG GCTCGCGCTG
AACATCGCGT CGTGCAAGCT GATCCTGCTG CACGCGAACG CGGGCCACGT GATCGACGCG
TTCGGGCGGC TCGTGGTCGG CAACAACGTC GTGGTGGGCG GCGTGGTGTT CCTCGTGATC
GCCGTCGTGC AGTTCATCGT GATTGCGAAG GGCTCCGAAC GGGTCGCCGA AGTCGGCGCG
CGCTTCTCGC TCGACGCGAT GCCGGGCAAG CAGATGAGCA TCGATGCCGA CCTGCGCGCG
GGCATCATCA GTGCAGACGA AGCGCGCGAG CGCCGCGAGA AGCTCGAGCA GGAATCGCAG
ATGCACGGCG CGATGGACGG CGCGATGAAG TTCGTGAAGG GCGACGCGAT CGCCGGCCTC
GTGATCGCGT TCATCAACAT CGTCGCGGGG ATCGCGGTTG GCACGCTGAT GCACGGCATG
GATATCGGCG AGGCGCTGCA GCGTTACGCG ATCCTGACGG TCGGCGACGG GATGGCGTCG
CAGATTCCGT CGCTGCTGGT GTCGATCGCG GCCGGCATCG TGACGACGCG CGTCGCGACG
CGCGACACGC GCCAGCGCCA GCTCGGCGAA CAGCTGGGCG AGCAGCTCGG CGCGCATCCG
CGTGCGCTGC TGATCGCGGC GCTCGTGCTC GCGGGCTTTC TCGTCGTACC CGGTTTCCCG
AAATGGTCGT TCGCGTTGAT CGCGCTCGGC CTCGGCGCGT TCGCCGTCAC GCAGTTGAAG
CGCAAGACGA CCGCGCCGAG CTTCAACCTG ATTCATATCG CCGGACGCAT CGGCGCGACC
GACGATGGCC AGCCCGCGAA GGTGTCGCAT GCGGCGGGCG TCACGTCGCT GATCGCGGTG
TCGCTGTCGG ACGACCTGCG CACGACGCTG AATCTCGCGC AGCTGCAGAC CGCGCTGTCG
AGCGCGAAGG CGCGCGTCGA TGCGGACATC GGCACGGTGT TTCCGCGCAT CACGCTGAAC
GACGACGAGG GCGCGCCGGC CAGTACCTAC CGGATCTATC TTCAGGACGT GCTCGCCGCG
CATGGCGCGC TGAAGCCGGG CTGGCTGCTG TGGGACGGCG TCGCGCCGCT GCCGGAGCGC
GCGGAGCGCC AGCCGGCCGA GGCCTTCGGC CCGTTCGCGA CCGCGCTGTG GATCAAGCCC
GACGGCCCGG CGCCGGACGG CAAGTGGCTG ACGAGCGAAG GCGCGCTCGC CGCGCACGTC
GAGCAGATCG TGCGCCAGCA CGCGGACGAG CTGCTCGGCA TCCAGGAGAC GCAGGCGCTC
GTGCACCTGG TGCGCCGCGA GCACCCCGAA CTGGTCGGCG AACTGACGCG GCTCGTGCCG
CTGCAGCGCG TGACCGAGGT GCTGCGCCGG CTGCTCGCCG AACAGGTGCC GATCCGCAAC
CTGCGCGTGA TCTTCGAGAG CCTGATCACG TGGGCGCCGA ACGAACCGGA CGACGTGATC
GCGCTGGTCG AGCTGGTGCG CGTCGACCTG CGCCGGATGA TTACCGATCG CCATGCGGGC
GCGGCGCGCC AGCTGCGCGT CGTGCTGTTC GAGCAGAACC TGCAGGAGCG GATCGAGAAC
GCGGTGATGC GCACCAAGCA GGGCAATTTC CTCGCGCTGT CGAGCGCGAT CAAGCAGGAC
ATCGGCGAGC AGGTGCGCGC GATCGTGCAG GCCGCGCAGG CGACCGGCGC CGGCGGCCAC
GGCAACCCGC AGGGTGCGCC GCGGCTCGCG GTGATGGTCG CGCTCGGCGC GCGCCGCTAC
GTGAAGACGA TCCTCCAGCC GGTGCTGCCC GATCTCGCGG TGCTGTCGTA CCAGGAGGTC
GAGGAAGACG TGCAGCTCCA TACGGTCGGC TGGGTGAAGA ACCCGCCCGA CGACGGCACG
CCCGGCGCGG GCGCCGGCGT GCGCGCGCCG GGAGTCGTGC AATGA
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| Protein sequence | MAEPKALPRD WQRIFSAGRS VSGRRLGASP RADLFLAGFI VSVVALFILP LPQAALDGMI
SLNLAASVVL LTVSTYVPSA VSFSSFPALL LFTTLFRLAL NIASCKLILL HANAGHVIDA
FGRLVVGNNV VVGGVVFLVI AVVQFIVIAK GSERVAEVGA RFSLDAMPGK QMSIDADLRA
GIISADEARE RREKLEQESQ MHGAMDGAMK FVKGDAIAGL VIAFINIVAG IAVGTLMHGM
DIGEALQRYA ILTVGDGMAS QIPSLLVSIA AGIVTTRVAT RDTRQRQLGE QLGEQLGAHP
RALLIAALVL AGFLVVPGFP KWSFALIALG LGAFAVTQLK RKTTAPSFNL IHIAGRIGAT
DDGQPAKVSH AAGVTSLIAV SLSDDLRTTL NLAQLQTALS SAKARVDADI GTVFPRITLN
DDEGAPASTY RIYLQDVLAA HGALKPGWLL WDGVAPLPER AERQPAEAFG PFATALWIKP
DGPAPDGKWL TSEGALAAHV EQIVRQHADE LLGIQETQAL VHLVRREHPE LVGELTRLVP
LQRVTEVLRR LLAEQVPIRN LRVIFESLIT WAPNEPDDVI ALVELVRVDL RRMITDRHAG
AARQLRVVLF EQNLQERIEN AVMRTKQGNF LALSSAIKQD IGEQVRAIVQ AAQATGAGGH
GNPQGAPRLA VMVALGARRY VKTILQPVLP DLAVLSYQEV EEDVQLHTVG WVKNPPDDGT
PGAGAGVRAP GVVQ
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