| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4665 |
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| Symbol | |
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| ID | 6179476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 1781415 |
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| End bp | 1782245 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641684424 |
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| Product | shikimate dehydrogenase substrate binding subunit |
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| Protein accession | YP_001811335 |
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| Protein GI | 172063684 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACCA CTCCACCCTC CTCGCCCGCG GTCAATGGCG AAACACAGGT AATTGTCTTG
ATGGCGTGGC CGGCCGCTCA CGTCCGGACG CCCACCCTGT TCAATGCCCT TTGCGCCAGG
AAGAACATCA ACGCGATCAT GGTTCCGTGG GCCGTGCGTC CCGAGCATCT GACGCAGGCG
TGGGACGGAT TGCGGCACAT CGCCAATCTG GCCGGTGTCG TGCTCACCAT TCCGCACAAA
CAGGCGGCGG CAGAACTGTG TGACGAGCTC GAAGGCGACG CATCGTTGCT CGGCGTCGTG
AACGCGGTTC GCCGCAACGC GAGCGGCGGT TATACGGGGC GAATGTATGA CGGTTCCGGT
TTTGTCGCCG GCATGCTGCG CGAGGGCATC GCGCTCGCGG GCAAGCACGT GCTTCTGCTA
GGCGCCGGCG GAGCGGCGAC TGCCCTTGCG TTGGCACTGG CGCGCGCGGG CATTGCACGG
CTGACGATCG CCAACCGCAG TCCGGAAAAA GCACACGACC TGGCGGCACT CGTCGGAAAG
GCGGTGCCGA ACTGTGAGGT AAGAGCCGGC AGCGACGAAC CGGGCAATCA CGACATCGTG
ATCAACGCAA CGTCGCTCGG GCTAAAACTT GACGACGCGC TGCCGTGCGA CACGTCGAAG
CTGACGCCTG CAATGGTCGT CGCCGAGGTG GTCATGCAGC CCGCGGTCAC GCGGCTTCTG
ACAGAAGCCG AAGCGCGTGG CGCTCGCACT CACCGTGGCG AACACATGGT TACGTCGCAA
CTCGATCACT TTGTCGAATT CCTGCTCCCC AACGTGAATC CGCAGGCCTG A
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| Protein sequence | MLTTPPSSPA VNGETQVIVL MAWPAAHVRT PTLFNALCAR KNINAIMVPW AVRPEHLTQA
WDGLRHIANL AGVVLTIPHK QAAAELCDEL EGDASLLGVV NAVRRNASGG YTGRMYDGSG
FVAGMLREGI ALAGKHVLLL GAGGAATALA LALARAGIAR LTIANRSPEK AHDLAALVGK
AVPNCEVRAG SDEPGNHDIV INATSLGLKL DDALPCDTSK LTPAMVVAEV VMQPAVTRLL
TEAEARGART HRGEHMVTSQ LDHFVEFLLP NVNPQA
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