| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4477 |
|---|
| Symbol | |
|---|
| ID | 6179674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1579706 |
|---|
| End bp | 1580590 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684238 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001811149 |
|---|
| Protein GI | 172063498 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.600704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.42821 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTGCG CCTTCGCCCG TACCGTCGAA TCCCGCTTTG CCGAGCTGAC GCCGACGGCG
AAGCGCATCG CGAGCTACAT GCTCGCGAAC CTCGACCGGC TGGGGCTCGA GACGGCCGAC
CAGATCGCGC AGCAGGCCGG CACCAGCGGG ATTTCGGTCG GGCGCTTCCT GCGCAGCGTC
GGCTACCGCA ACCTCGACGA CCTGAAACGC GAGTTGCGCG GCGGCGCCGA CCGGCCGTGG
ATGATCACCG ACCGCCTCGA CGAATACCGC CGCACCAACG GCACCCCCGG CCCCCAGGCG
GCCGCCACCA ACAGCAGCGA CCGCGCGCTC GCGTCGTCGC TCGATCGCGA ACTCGACGCG
ATCCGCCACG TGTACCGGCT CGCCGAGGAA CCGGTGTTCG CGCAGGTCGC GGACCGGATC
GCGCATGCCG ACGCGGTATT CATCCTCGGC ATCCAGTCGA CCCGCGGCAT CAGCAATGCG
TTCAGCAGCT ATCTCGAGTA CCTGCGCCCG CGCGTGTTCT ATTCGGACGG TCAGTCGGGC
TCGTACGTCG ACTCGCTGAA TTCCGAGTTC GAGCGGCCGT ATTGCATCGT CACCGACGTG
CGCGCCTATT CGCGCAGCGC GCGCCGCTAT TGCCAGGCGG CCGCCGAGCG CGGCCAGCCG
TTCGCGCTGG TCACCGATCT CTATTGCCCG TGGGCACGCG AATGGCCGGC CGACCTGCTG
CAGGTAAAGA CCGACGTCGG CCAGTTCTGG GATTCGCTCG CGCCGCTCAC CTGCCTGTTC
AACCTGCTGA TCACCGCCGT GGTCGATCGC CTCGGTCCCG CGATCGACCG ACGCGTCGCG
CGCAACCGCG AACTGCAGCA CACGTTCGAC CAATTCGAAT CCTGA
|
|---|
| Protein sequence | MTCAFARTVE SRFAELTPTA KRIASYMLAN LDRLGLETAD QIAQQAGTSG ISVGRFLRSV
GYRNLDDLKR ELRGGADRPW MITDRLDEYR RTNGTPGPQA AATNSSDRAL ASSLDRELDA
IRHVYRLAEE PVFAQVADRI AHADAVFILG IQSTRGISNA FSSYLEYLRP RVFYSDGQSG
SYVDSLNSEF ERPYCIVTDV RAYSRSARRY CQAAAERGQP FALVTDLYCP WAREWPADLL
QVKTDVGQFW DSLAPLTCLF NLLITAVVDR LGPAIDRRVA RNRELQHTFD QFES
|
|---|
| |