| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4222 |
|---|
| Symbol | |
|---|
| ID | 6179338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1278312 |
|---|
| End bp | 1279640 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641683991 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001810902 |
|---|
| Protein GI | 172063251 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.130857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.414624 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTC AACACGTCCA GATCCTGCCT TCCGCGGCCG GCGACGCAAG CGCGTCGCTG
AACCGGCTGC TGTTCCGCAA GCTCATGCCG CTGCTGATCG CCGCCTACGT CATTAGCTTC
CTCGACCGCA CCAACATCGC CTTCGCGAAG CACTCGATGG GCGTCGATCT CGGCATTTCA
TCCGCGGCCT ACGGGCTCGG TGCCGGCCTG TTCTTCCTGA CCTACGCGCT GTTCGAGATC
CCGAGCAACC TGATCATGCA TCGCGTCGGC GCGCGCTTCT GGATCACGCG GATCATGATC
ACGTGGGGCG CGTTGTCGGT CGCGATGGCG TTCGTCGGCG GCCCGACGTC GTTCTACGTG
ATGCGCCTGC TGCTCGGCGC CGCCGAAGCC GGACTGTTTC CGGGGGTGAT GCTGTACCTC
ACGTACTGGT TCGGTCGCGA GGAGCGTGCG CGGGCGACCG GCTATTTCCT GCTCGGCGTG
TGCATCGCGA ACATCGTCGG CGGGCCGCTG GCCGGCGCGC TGATCGAACT CGACGGCACG
CTCGGCTTCC ACGGCTGGCA ATGGCTGTTC GTCGTCGAAG GGATTCCGGC GATCCTGCTC
GCCTTCGTCG TGTGGACACG CCTGCCGGAC CGCCCGAGCC GCGCGCCGTG GCTCGCCCCC
GAAACCGGCG GCGCACTCGA ACGTGCGCTG GCAGCCGAAC AGGATGCCGG GGTCGCCGCT
CACGGCGGCC ACAAGTTCGG CGCCGCGCTG CGCGATCCGC AGATCTGGCT CGCGATCTTC
GTGTACTTCT GCCATCAACT GACGATCTAC ACGGTGATCT TCTTCCTGCC GGGCATCATC
GGCGCATCGG GGCACTTTTC GCCGTTCGCG GTCGGGTTGC TGACCGCATT GCCCTGGCTC
GCCGCCGCAC TCGGCGCCGC AACCCTGCCG CGCTTCGCGC GCGAGTCGCA TCATTCGCGC
CGGATCCTGT GCGTCGGCCT CATCGTGATG GCGGCCGGAT TGGTGGGCGC CGCACAGGCG
TCGCCGGTGG CCGGCCTCGC CTGCGTATGC GTCGCCGCGT CGATGTTCTT CGTCGTGCAG
TCGATCGTGT TCACGTTTCC TGCGTCGCGA CTCGCCGGCA GCGCGCTGGC CGGCGGTCTC
GGTCTGGTGA ACACGTGCGG CCTGCTCGGC GGCTTCGTCG GCCCGACTGT CGTCGGCGCG
ATCGAACAAG CGACCGGGAA TGCGAAAAAC GGACTGACGC TGCTCACCGC GGCGCTCGTC
GTCGCCGCGT TCGCGAGTCT CGCGCTGCGC CACGGGCACG AGCGGCCCGC TGCGCGATCG
CAAGGCTGA
|
|---|
| Protein sequence | MSTQHVQILP SAAGDASASL NRLLFRKLMP LLIAAYVISF LDRTNIAFAK HSMGVDLGIS
SAAYGLGAGL FFLTYALFEI PSNLIMHRVG ARFWITRIMI TWGALSVAMA FVGGPTSFYV
MRLLLGAAEA GLFPGVMLYL TYWFGREERA RATGYFLLGV CIANIVGGPL AGALIELDGT
LGFHGWQWLF VVEGIPAILL AFVVWTRLPD RPSRAPWLAP ETGGALERAL AAEQDAGVAA
HGGHKFGAAL RDPQIWLAIF VYFCHQLTIY TVIFFLPGII GASGHFSPFA VGLLTALPWL
AAALGAATLP RFARESHHSR RILCVGLIVM AAGLVGAAQA SPVAGLACVC VAASMFFVVQ
SIVFTFPASR LAGSALAGGL GLVNTCGLLG GFVGPTVVGA IEQATGNAKN GLTLLTAALV
VAAFASLALR HGHERPAARS QG
|
|---|
| |