| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4176 |
|---|
| Symbol | |
|---|
| ID | 6179261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1223941 |
|---|
| End bp | 1225179 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641683945 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001810856 |
|---|
| Protein GI | 172063205 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.943323 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACATCGT TGCCCGACAT GAGCGCCGTG CGTGCGAACC TCGCTTTTAC CTGCACGCAT
CAGGCCGATC ATTTGCCGTC GCTTGATCCA CAAGCAGACA GTCTGTTTCG TTACGCACGG
TTTTTGGAAA AGCAGGACGG TCCGAAGGAT TTCAACGAGG TTGCGCGCTA TTACCGAATC
GCGGCAGCGC ACGGGCACTA CAAGGCCAAC CAGAATCTTC AGTCGTTGAT TTCCGATGGT
TTGGCGGACT CGCCCGATGC GCCGAAGGAG ACGGTGGCGC TTGCCGTGCG ACTGATTCAA
CAAGGCATCC CCGCGGGCTA TTACGACATC GGCCACTATC TCGAAACGGG CTATGGACTG
GGGCAAGATG CCGAGATGGC GCTGCGCTAT TTTCGGAAGG CTGCCGATCT GGGGAGCCCG
GAAGCGCAGA CATATGTTGC CGAGTTGTTG GCCCCACATG ACAAGGCCCC GGATGTTGCG
CGCCAGATGC GTCGGTGCGC GGCCGACCAA GGGTATGGCG AGGCAGCCAA CGCGTTGGGA
ATTAATTTGA AGAATAGCGC GTTGTATAGC GAAGCGGTCG ATGCTTTTCA GAAGGGCGTA
GCGGCAGGCA ACACCCAAGC CGCTTTGGCG CTCGAAAACG GGTTCAAGGC TCCGCCTCAG
TCCGATCGGC TTTCATATCT GTCGCTTCCA AATGATGTGG AGCGAACACG CCGCTACGCC
TTGATCGGTA AGTTCATCGA CGGTAACGAC GGACGCAATC CCAAGGTTCC GGACATCGAC
AAGATCGTGC CGCTTCCGCC GGCACAGCTT CCGCCATGGG ATGGCACCTT CCAATGGCAG
AAGGAACAGG AAGCTGCTGT CCCGCCGCAG AAGCCTTCGG ACGAGATGAT CAATGAGATG
GCGAAAGCCC AAAATCTCGA TCCGAAAACC GGTTTGCCGC TCGAAGGGAA AACCGAAAAG
ACTTCGCAAC AGGATCAGCC GCAGACCGTT GCTGCACGTC TGCCGTTGGG AACCGTCGCG
CACACCGGCC AGCAATGCCC GGAAGGTGGG GTATGGTGCG CGAAACTGGA TGCCGGTCAG
GTCGGCGATG CGACACGCAG GTTTCTAAAG GGTGACGCGT TGCCGTCCGT TATCGTGCAC
GAACCACGAC GGCTGGCCGT TCTCGACAGC GTGATGGGTA CGCGGCAGCG CATGGCACCT
GTCGCATGGG AACTCGTCGC TTACCTCGAC CAGGCTTGA
|
|---|
| Protein sequence | MTSLPDMSAV RANLAFTCTH QADHLPSLDP QADSLFRYAR FLEKQDGPKD FNEVARYYRI
AAAHGHYKAN QNLQSLISDG LADSPDAPKE TVALAVRLIQ QGIPAGYYDI GHYLETGYGL
GQDAEMALRY FRKAADLGSP EAQTYVAELL APHDKAPDVA RQMRRCAADQ GYGEAANALG
INLKNSALYS EAVDAFQKGV AAGNTQAALA LENGFKAPPQ SDRLSYLSLP NDVERTRRYA
LIGKFIDGND GRNPKVPDID KIVPLPPAQL PPWDGTFQWQ KEQEAAVPPQ KPSDEMINEM
AKAQNLDPKT GLPLEGKTEK TSQQDQPQTV AARLPLGTVA HTGQQCPEGG VWCAKLDAGQ
VGDATRRFLK GDALPSVIVH EPRRLAVLDS VMGTRQRMAP VAWELVAYLD QA
|
|---|
| |