| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4024 |
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| Symbol | |
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| ID | 6181285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1041475 |
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| End bp | 1043037 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641683794 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001810705 |
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| Protein GI | 172063054 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.2717 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACGC CACGCCCCAC GCTTCGGGCG GACACGCCCC TCGATCCGAT CATCCAGCTG
CTGGCGCTCG CCGGCGAACA GGGTTATCTG ACGCACGCCG ACCTCGTCGA CGCGCTGCCG
CCGGAAAGCG ACAGCCCCGA CGCGCTGGAC GTCGTGCGCG CCGCACTCGC GGACATCGGC
ATCGCCGTGC TCGACGAGCC GGCCGCGCCG GCGCCGTTCG CGGGCGCGGC ACCGGTCGAC
GTCGATCGCG ATGCGCTCGA CGAGGGCCGC GCGCTGCTCG GCGATCTCGC CCGCGGCACG
AGCGCGTCGA CCGATCCGCT CGCGCTCTAT ATGCGACGCA TTCATGCGGT GCCGCTGCTC
AAGCGCGAGG ACGAGATCGT GCTCGCCCGC GAGATCGAAA CGGGCCGCCA TCAGATCCTG
CACGCGCTCG CCGGCTATCC GGCGGCGGTC GATGCGCTGC TCGCGCGCCA TGGTGTATCG
GGTGTAAGCG GTGCGGCCGG AGACGAAGGC GATGACATCG GCGACGGTGA AGGCGGCACG
CCGGCCCCCG CGCGCTACGA CACGCTGCAG GACGCCCTCA CGGCCCTGCG CGGCGCATTG
CACGCGCAAG GCTGCCGCTC GGCCGAATAC CGCGATGCGC GCAACCGTCT CGCCGCCCTG
CTCGGTTCGC TCGCGTGGGT TGCGCCGGCC GTCGACGATG CGACTCGCGT CGTGCGCGCG
CTCGCCGCCG CGCCGGCCAA CGCCGCCGCC AGTAGCAACG CCGACCCCGA CGTCGCGTGC
TTCGACGCGG TCGCGCGCCG TGCGCTCGGC GCCGCGCTGA GCGACGGTCA GCAAAAGATA
CGCGACGGTA CCCGCGCGAT GCTGGAGGCG AACCTGCGGC TCGTGCTGTC GATCGCGCGC
AAGTACATGA ACCGCGGCGT CGACCTGCCC GACCTCGTGC AGGACGGCTG CCTCGGCCTG
ATGCGCGCGA TCGAGAAGTT CGAATACCGG CGCGGCTTCA AGTTCTCGAC CTATGCGACC
TGGTGGATCC GGCAGGCGGT CGCACGCGCG GTGGCCGACC GCTCGCGCAC GATCCGCGTG
CCCGTGCACG TCGGCGACCA GTACCAGCGC GTGCAGCGGC ATGCGCTGCG CTTCCGCCAA
CGCACGGGCC GCCGCGCGAC GCCGGCCGAG CTGGCCGCCG AAACCGGGCT CCCCGAGGGC
AAGCTGCGCG CGGTGCTCGC GCTGCCTGCC GAGCCGCTGT CGCTCGACAC GCCGCTGCCC
GACGCGGAGA CGGGCCTCGT CGACCTGATC GAGGACCAGG CGTCGGCGAG CCCGTTCGAG
CGCCTGGCGG ACACGCGCAT GCGCGAATGC GTGACGTCGC TGCTGCGTTC GGTCACGCCG
GCCGAAGCCG ACGTGCTGCG CCGGCGGTTC GGCCTCGGCG GCGCCGAGCC CGACACCTAC
GACGCGATCG CGCAGGACGC GGGCATGTCG CGCGAACGCG TGCGGCAGAT CGAGAAGCGC
GCGCTCGCCA CGCTGCGCAC GGCCGCGGAG GCCGAGGGCG CGGAGTCGTT CCTCGACGCG
TAA
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| Protein sequence | MTTPRPTLRA DTPLDPIIQL LALAGEQGYL THADLVDALP PESDSPDALD VVRAALADIG
IAVLDEPAAP APFAGAAPVD VDRDALDEGR ALLGDLARGT SASTDPLALY MRRIHAVPLL
KREDEIVLAR EIETGRHQIL HALAGYPAAV DALLARHGVS GVSGAAGDEG DDIGDGEGGT
PAPARYDTLQ DALTALRGAL HAQGCRSAEY RDARNRLAAL LGSLAWVAPA VDDATRVVRA
LAAAPANAAA SSNADPDVAC FDAVARRALG AALSDGQQKI RDGTRAMLEA NLRLVLSIAR
KYMNRGVDLP DLVQDGCLGL MRAIEKFEYR RGFKFSTYAT WWIRQAVARA VADRSRTIRV
PVHVGDQYQR VQRHALRFRQ RTGRRATPAE LAAETGLPEG KLRAVLALPA EPLSLDTPLP
DAETGLVDLI EDQASASPFE RLADTRMREC VTSLLRSVTP AEADVLRRRF GLGGAEPDTY
DAIAQDAGMS RERVRQIEKR ALATLRTAAE AEGAESFLDA
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