| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3651 |
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| Symbol | |
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| ID | 6180540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 598829 |
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| End bp | 601168 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641683421 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001810334 |
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| Protein GI | 172062683 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.982905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATGA TTCTGCCTTC GCAGGCTTAT GAATTGAAGC TGGCGCCGCA TCCGGCGCCG
ACGTCCGTGC TCCGCTTCAC GGGCCGGGAC GCCGTGAGCG AGTTGTACCG CTACGACATC
GAATTCACGA GCCCGGCGGT CGGTATTCCA ATGGATCAGG TGGTCGGTCG CCCGGCAAAA
TTCATCGTCG CGCCGGTCGA TCCGAATATG GACTATCTGC GCAGAATGTT CGGCGAGAAC
ACGGAGCAAT TCAGCAAGAT GCCGCCGACC TATACGATCC ACGGCGTCAT CACGGAGTTC
GACGAGCTCG ACACCTCGGC CGATCAGACA CACTATCGGG TCCGGCTGGA GCCCGAGCTC
GCTGATTTGA ACAGGGGCGT GACGAGCCGG TTGTTCCAGA AGCAGTCGAT CGAGGAGATC
GTGACCGACA CGCTGCGCCA TTATGGCTAC CGGGCCGGGG TCGATTTCCA GTTCCAGTTG
CGCGGTCAGT ACAAGCGCCG CGAGTACGTG ACCCAGTATC ACGAAACGAC GTTTTCCTTT
ATTCAGCGAA TCTGCGCCGA GGAAGGGCTC TGGTTTCGCT GGGAGCAGCG GAAGGATTAT
GCGGTGCTCG TGTTTGGCGA CGATCTGGAC GCCTATGCGC GCAAGCAGCG CACCGTGTCG
CACCGGCGCG ACTCGGGGCT CGAGAGTTCG GGCATGGACG CGATCAAGAC GCTCGAGAAG
CGGACTCGGC GCGTGCCGGA AGCCGTACGG TTGCACGATT ACAACCACCG TGAGGCGGGT
GTGTCGCTGC TAGTCGAGGA AAATGCCGCA CGCGACGACA AGACGACGAG CGGCATCGAT
TACCAGTGGG GCGAGCACTA CGAGACGCCG GAAGAGGGCA AGAGCGTCGC CCGTCGGCGC
CACGAGGAAT ACCTGACCAA CCAGATCACC TTCAGAGGTA CCGGAAATCC GTTCTGGCTC
GAGGCGGGTG AAGTCATGCG GCTGGCGCCG CATCCGGTCG ATGCGAAGCA CGGGATTTTC
GTCACGGCGG TGGAGTCGCA AGGCGGGCGC GACCAATCGT ACTGGGTGAC CTTCGAGGGG
ATTCCGTCAG ACCGCGTATG GCGCACGCCG GTTGCGTCGA TCGAGCAACC GGTCATCGAC
GGTATCCTGC CGGCCCGGAT TACGTCACCT GGCGATTACA AATACGCGTA CCTGACCGAG
CAGGGCTGGT ATGTGATCAA GCTGCCGTTC GATCTCGATG AGTGGAGCCC GGGCGGCACC
AGCCGGCCGG TACGGTTCGC GAAACCGTAT AGCGGCGACA ACTATGGGCA TCACTTCCCG
CTGATTGACG GTGCGGAGGT GGCGGTTGTC TTCACGCAGG GGAATCCTGA CCGACCCGTG
ATCATCGGGG CCATGCACGA CAGCCTGCAT CCCGATCTCG TCACCAGTCA GAACCATACC
CGGAATCTGA TCCGCACCGC CGCGCAGAAT GAACTGCGGA TGGAGGACAA GGAAGGTGTC
GAGCACGTCC ATCTGACGAC GCCGTTTGAG GCGAGTGAGC TGAACCTCGG TCACATGGTC
GACGGAGATC GCAAGGATCG CGGGCGGGGT GTCGAGTTGC GCACCGACGG GCCAGCGGCA
GTTCGGGGAT CGAAGGGTGT GTTGGTGACT GCGGAGGGAC AGCCCGGCGC CGCGGGACAG
CAGCTCGACA TGCAGGACGC CGACACGACG CTCGAGCAGG CCGAACAAAT CCTGAATGCG
CTGAACGACT CGGCGAACGC GGCGAAAGCG CTGCAGGCTG ACATCGATCA ACAGCGCGTA
CTGATCCATC AAAAGCTCAA GCAGCTTCAG AAACCCGTCA TTGTTGCGAC AGCTCCCGAT
GGCGTCGGGA TTGTCAGTGG TCAGCAGATG CAGCTTGCCG CCCGTAAGCA AATGTTCGTG
ACCGCCGGCG ACGGGCTCGA CATCGGCGTC ATGAAGCGTA TCGCGGTAGC GGCCGGCGAG
GCGATCTCGC TTTTTGCGGC AAAGCTCGGG ATTCGAATCT TTGCCACGAA GGGCAAGGTC
CAGGTACAGG CACAGTCCGA CGCGATGGAA CTGATGTCGA TGCAGGACAT GGCAGTCAGT
TCGTCGGATG GCGAAGTAAT CATCACCGGC CGCAAAGGTG TCACGCTCGG CGATGGATCG
GGCGCTTATA TCAAGTTGTC GGGCGGCAAG ATCATCCTCG GGAGTCCGGC CGGAGAAATC
GAGGCCAAGG GAAATCTGAC GATCGACGAC CCTGACGGCG GTAGTTTCAA ATTTCCGACT
TGGGCCGCGG CGCCCGTCAG CGACGTGCAG ACTGCAACGA ACTTCGGATT TTCGGAATAA
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| Protein sequence | MSMILPSQAY ELKLAPHPAP TSVLRFTGRD AVSELYRYDI EFTSPAVGIP MDQVVGRPAK
FIVAPVDPNM DYLRRMFGEN TEQFSKMPPT YTIHGVITEF DELDTSADQT HYRVRLEPEL
ADLNRGVTSR LFQKQSIEEI VTDTLRHYGY RAGVDFQFQL RGQYKRREYV TQYHETTFSF
IQRICAEEGL WFRWEQRKDY AVLVFGDDLD AYARKQRTVS HRRDSGLESS GMDAIKTLEK
RTRRVPEAVR LHDYNHREAG VSLLVEENAA RDDKTTSGID YQWGEHYETP EEGKSVARRR
HEEYLTNQIT FRGTGNPFWL EAGEVMRLAP HPVDAKHGIF VTAVESQGGR DQSYWVTFEG
IPSDRVWRTP VASIEQPVID GILPARITSP GDYKYAYLTE QGWYVIKLPF DLDEWSPGGT
SRPVRFAKPY SGDNYGHHFP LIDGAEVAVV FTQGNPDRPV IIGAMHDSLH PDLVTSQNHT
RNLIRTAAQN ELRMEDKEGV EHVHLTTPFE ASELNLGHMV DGDRKDRGRG VELRTDGPAA
VRGSKGVLVT AEGQPGAAGQ QLDMQDADTT LEQAEQILNA LNDSANAAKA LQADIDQQRV
LIHQKLKQLQ KPVIVATAPD GVGIVSGQQM QLAARKQMFV TAGDGLDIGV MKRIAVAAGE
AISLFAAKLG IRIFATKGKV QVQAQSDAME LMSMQDMAVS SSDGEVIITG RKGVTLGDGS
GAYIKLSGGK IILGSPAGEI EAKGNLTIDD PDGGSFKFPT WAAAPVSDVQ TATNFGFSE
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