| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3553 |
|---|
| Symbol | |
|---|
| ID | 6180659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 485340 |
|---|
| End bp | 486506 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641683322 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001810236 |
|---|
| Protein GI | 172062585 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.999855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.290616 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATCG TCGAGATTCG CGAACAAACC GTTCCGATCA GTTCCCCGAT CCGCAACGCC
TACATCGACT TCAGCAAAAT GACGCTGAGC CTCGTCGCCG TGATCACCGA CGTGATCCGC
GACGGCAAGC CGGTCGTCGG CTACGGCTTC AATTCGAACG GCCGCTACGG CCAGGGCAAG
CTCATGCGAG AGCGCTTCAT CCCGCGCATT CTCGAAGCCG ACCCCGGCAC GCTCGTCAAC
GATGCCGGCG ACAACCTCGA TCCGCACCGG ATCTGGGCGA CGATGTTCAC CAACGAGAAG
CCGGGCGGCC ATGGCGAGCG CTCGGTCGCG ATCGGCACGA TCGACATGGC GGTGTGGGAC
GCGGTGGCCA AGATCGAAGG CAAGCCGCTG TTCCAGCTGC TGGCGGACCG CTACGGCGAC
GGCCGGCCGG ACCGCAGGAT CTTCGTCTAT GCGGCGGGCG GCTACTACTA TCCGGGCCAG
GATCACGAGA AGCTGAAGGA CGAGATGCGC AGCTACATCG ACCGCGGTTA CACGGTCGTG
AAGAAGAAGA TCGGCGGCGC GTCGCTCGAC GAAGATTTGC GACGCATCGA CGCGATCCTC
GGCGTGCTCG GCGATGGCCA GAAGCTCGCC GTCGACGCCA ACGGCCGCTT CGATCTCGAC
ACCGCGATCC GCTATGCGAA GGCGCTGTCG CAATACGACC TGTTCTGGTA CGAGGAACCG
GGCGATCCGC TCGACTTCGA GCTGCAGGCG ACGCTGCGCA ACTACTACGA CAAGCCGATG
GCGACGGGCG AGGACCTGTT CTCGATGCAG GATGCCCGCA ACCTGATCCG CTACGGCGGC
ATGCGCGCCG ACCGCGACTG GCTGCAGTTC GACTGTGCGC TGAGCTACGG CCTCGTCGAG
TATCTGCGCA CGCTCGACAT GCTGCGCCAG CACGGCTGGT CGCTGAGCCG CTGCATTCCG
CACGGCGGTC ACCAGATGTC GCTCAACATC GCGGCCGGCC TCGGCCTCGG CGGCAACGAG
TCGTACCCGG ACCTGTTCCA GCCGTACGGC GGCTTCCCCG ACGGCGTGAA GGTCGACAAC
GGCTACATCA CGATGCCGGA CCTGCCGGGC ATCGGCTTCG AAGGCAAGGC CGACCTGTAC
GCGCAAATGC GGAAACTGTC CGCATAA
|
|---|
| Protein sequence | MRIVEIREQT VPISSPIRNA YIDFSKMTLS LVAVITDVIR DGKPVVGYGF NSNGRYGQGK
LMRERFIPRI LEADPGTLVN DAGDNLDPHR IWATMFTNEK PGGHGERSVA IGTIDMAVWD
AVAKIEGKPL FQLLADRYGD GRPDRRIFVY AAGGYYYPGQ DHEKLKDEMR SYIDRGYTVV
KKKIGGASLD EDLRRIDAIL GVLGDGQKLA VDANGRFDLD TAIRYAKALS QYDLFWYEEP
GDPLDFELQA TLRNYYDKPM ATGEDLFSMQ DARNLIRYGG MRADRDWLQF DCALSYGLVE
YLRTLDMLRQ HGWSLSRCIP HGGHQMSLNI AAGLGLGGNE SYPDLFQPYG GFPDGVKVDN
GYITMPDLPG IGFEGKADLY AQMRKLSA
|
|---|
| |