| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3479 |
|---|
| Symbol | |
|---|
| ID | 6179504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 399784 |
|---|
| End bp | 402477 |
|---|
| Gene Length | 2694 bp |
|---|
| Protein Length | 897 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641683248 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001810162 |
|---|
| Protein GI | 172062511 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.477057 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCG CGCTCGACGA GCGGCTCGGC GAGCCCTATC GAATCGACCT GACGCTGACC
AGCCCGGCTC CGCTCGCGCG TCCGGACTAT CTCAATCGCC CGGCGATCTT CACGATCGAG
CCGGCAGGAG CGGCCGGCGC CGCCGATGCG CGGCGTACCT TCGCCGGCTG TATCACCGCA
TTCGGCCAGA TCCGCAAGAC CCACGATTTC GTGTCGTATC GCATCGTTGT CGAGCCATTC
GTCGCTCGCC TGTGTCTCGT CGAAACATCA CGCATCTACC AGCAGCAGTC CGTGCCCGAG
ATCATCGAAT CGATCCTGAG GCGGCACGAA TTCCGCTCCC ATCAGTTCTC GTTCAAGCTG
AGGCGCGCCT ATCCGCGTCT CGCGTTCCGC ATGCAGTACC GGATGTCCGA CTGGGACTAC
ATCAGGTTGC TGATGGAACA GACGGCCTTG TTCTGCTTTT TCCGTGCCGG GCAGCATGGC
GACGAACTGC ATTTCGGCGA CGACGTCGAT GCCTACACAT ATCGTCCGGA TGTCGTGATT
CCGTATCGCG AGGCAAGCGG ACTCGAAACC GGTCACGAAG CCGTGCTGTC GCTCGAGTCG
CTGAGCGAAA CAATTCCGCA GTCGGTGAAG GTTGCCGATT ACAACCCGGA CAAGGCCTAC
GACCGCTTCA ATGCCGAAGT GAATATCGTT CGCGACGATC CGACGACATG GGGCCGGCAT
TACGTCTTCG GCACGCATCA TCTGGACGGC AACGAAGCCC GGCACGAAGC GCAGTTGCGT
CACGAAGCCG CGGTTGCGTG GCAGGTCGTG TATTCCGGCA CGAGTTCGGT GGTGGATTTC
GCCCCGGGGC TCGTCGCGAA GCTCGACGAG AAGCCGGCCG ATGCGCCGCA CGGGATCGTC
ATCATTGCCG TGCGTCACGA AGGCGGTCGG GATGCGTCGT ACATCAACAC GTTCGACGCG
ATTCCCAGTG GCCGGCCGTT CCGCCTGAAG CTCGACGAAC GGCGCTGGCC GGCAATCGCC
GGCACGCTGT CGGCGCGCGT TACGGCGCCG GATACTTCGC CCTATGCGCA TCTGACGAGC
GCTGGCCTCT ACACCGTACG ATTCGATTTC GACTTCGACG ACTGGGCGGC AGGTGGTGAA
TCCGTGCCAC TCAGGCTGGC CAAACCATTC GCCGGTGACA ACCAGACAGG CTTCCATTTC
CCGCTGCTCG CCGATACGGA GGTGGCGGTT GCATTCGTGG GTGGCGATCC GAATCGGCCT
TATATCGCGC ACGCACATCA TCACAGTCAG GCGACCGACC TGGTGACGAG CCGGGACGAA
TTCAATACGC GCAACGTGAT CCGCACGCGG GCCAACAACA AGCTTCGTTT CGAGGATCGG
AAAGGACGCG AAGGCATCAA GCTGTCGACG GACTACGGCG GCAAGACTCA GGTCAATCTC
GGTTATCTCG TCGACAGCCG GAAGGCGACG CGCGGTGAAG GGTTCGAGGT CAGGACCGAC
GAGCGCGGGG TACTGCGTGC GGGCAAGGGG CTGTTCCTGA CGGCCGATGT CCAGTCGAAC
GCAGGCGGAC AGGCTTTCGA CATGACGGCG GCCCGCCAGC AGCTCGATGC GGCCAAGTCC
CGCATGCGCA GCCTGACCGA AGCGGTCGAG AAGGCTCGAG CAACGGTGGC CGCATGCGAC
GCACAGCAGG CATTGCTCGA GTCGCAGATC AAGGATCTCG AAGCGGCTGT GTTGCTCGCG
TCTGCGCCAC ACGGCGTGGC GATCACCAGT GGCGAGCACA TGCAACTGGC GGCAGGGGGA
CATCTGTTCA CGACGACGGG CGGCAATGCG GATGCGGCGA TCGGCGGCAA TTTCACGGTC
GCGGCCGGCA ATGCGGTATC GATGTATGCG AATGCGCAGG GGATGAAGCT ATACGCGGGC
GCCGGCAAGG TCGACGTGCA GGCGCAGGCA GACGCGCTCG AACTCACGGC GCTGAAGGGC
GTGACGATCG CGAGCACGTC GGATGCGGTG ACGCTGAATG CGCAGAAGGC ACTGACGCTG
ATGTGCGGTG GCGCCTATAT CAAGCTCGAA GGCGGAATCG TCGAGATCGG CAGTGCGGGC
GAGATTCGGG TGAAAGGGCC ATTGAGCGTC GGGCCATCCG CGACCCTGAG GCAGGCGTTG
CCGCTGATGC CTGAGCAGGA ACAAACCGGC ATGCAACTCT GGCATGCGTA CCCGAATGGC
GAGCCGGTCA GGAACGCACC GTATCGCGTG ACGTTTCCGG ATGGTTCCTG GCGCGAGGGC
CGGCTCGATG CCAACGGCAG GGGCACGGTC GCGAATGTGC CGCGTGGCGG CGGCGCGGTG
GAGTATCTCG AAGAAGACCA CGATATTCAG GACAAGGCGC GCAAGTGGGT CGACCCGAAA
GGAACGGCGC TATTTGCGGC GGCCGGGCGC GATGCCGGCC AGGCGGTGCC TAGTCTCGTC
GGGGCCGTGA TGGCGGCGAC GGTGCCGGAA AGTGACGCAG TCAAGCAAGG ACTGGATGCG
GCTGCCTCCA TCGGGGCGGC AACATCCGGC GTCGCGAAAG GCGACGGCGC CGCGCTTGCT
CGAGCCGCAC TCGAACCGGT CGGGCAGCCG GTTGCGAATG CCGCTGCCAA TCGTGCGACA
GCCTCGGTAT CGGATGTCAC GCCTGCGCTC GTCAAAACCA CCGTGTCGCG TTGA
|
|---|
| Protein sequence | MSFALDERLG EPYRIDLTLT SPAPLARPDY LNRPAIFTIE PAGAAGAADA RRTFAGCITA
FGQIRKTHDF VSYRIVVEPF VARLCLVETS RIYQQQSVPE IIESILRRHE FRSHQFSFKL
RRAYPRLAFR MQYRMSDWDY IRLLMEQTAL FCFFRAGQHG DELHFGDDVD AYTYRPDVVI
PYREASGLET GHEAVLSLES LSETIPQSVK VADYNPDKAY DRFNAEVNIV RDDPTTWGRH
YVFGTHHLDG NEARHEAQLR HEAAVAWQVV YSGTSSVVDF APGLVAKLDE KPADAPHGIV
IIAVRHEGGR DASYINTFDA IPSGRPFRLK LDERRWPAIA GTLSARVTAP DTSPYAHLTS
AGLYTVRFDF DFDDWAAGGE SVPLRLAKPF AGDNQTGFHF PLLADTEVAV AFVGGDPNRP
YIAHAHHHSQ ATDLVTSRDE FNTRNVIRTR ANNKLRFEDR KGREGIKLST DYGGKTQVNL
GYLVDSRKAT RGEGFEVRTD ERGVLRAGKG LFLTADVQSN AGGQAFDMTA ARQQLDAAKS
RMRSLTEAVE KARATVAACD AQQALLESQI KDLEAAVLLA SAPHGVAITS GEHMQLAAGG
HLFTTTGGNA DAAIGGNFTV AAGNAVSMYA NAQGMKLYAG AGKVDVQAQA DALELTALKG
VTIASTSDAV TLNAQKALTL MCGGAYIKLE GGIVEIGSAG EIRVKGPLSV GPSATLRQAL
PLMPEQEQTG MQLWHAYPNG EPVRNAPYRV TFPDGSWREG RLDANGRGTV ANVPRGGGAV
EYLEEDHDIQ DKARKWVDPK GTALFAAAGR DAGQAVPSLV GAVMAATVPE SDAVKQGLDA
AASIGAATSG VAKGDGAALA RAALEPVGQP VANAAANRAT ASVSDVTPAL VKTTVSR
|
|---|
| |