| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2850 |
|---|
| Symbol | |
|---|
| ID | 6177748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 3162177 |
|---|
| End bp | 3163538 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641682626 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001809542 |
|---|
| Protein GI | 172061890 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.359234 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGCA GCGGCATGCT GTCCGCCTGC GGCGGCGATT CGATCGACTC CGACGCCTCG
GCCCGCTTCG CCGACGACTT CGTATGGGGC GTCGCCACCG CCGCGCCGCA AATCGAAAGC
CGCGACGGCC GCGGGCGCAG CAACTGGGAC GTGTTCGCCG ACCAGCCCGG CACGATCGCC
GACGGCTCGA CGAATGCGCG CTGCATCGAG TTCGAGAAAC GCTACCCGGG CGATCTCTCG
CTGCTCGCGA ACGCGGGCGT CCAGGCATTC CGGTTCTCGA CCGCGTGGCC GCGCGTGCAG
CCGGACGGCC CCGGCGCGGC GAGCGAAGCG GGCCTCGCCA CCTACGATCG CATAGTCGAC
GCGATGCTGG AGCGGCACCT CACGCCCTAC CTGACGCTGT TTCACTGGGA CATCCCGGTG
TGGGCCGGCG ATTTTCGCGA TCGCGACATC GCGTACCGGC TGGCCGACTA CGCGCAGCAG
GTGTCGCGCC GGCTCGGCGA CCGGGTCAAG CACTGGATGA TGCTGAACGA GCCCAACGGC
GTCGCGCTGT CCAGCTATGC GTACGGCGCG TCGCCGCCGC GCGCGCAGTC CATGGGGGCG
ATGTTCGCCG CGATCCATCA TCAGAACCTC GCGCAGGGGC TCATGTTCCA GGCCGTGCGT
TCGAACGTGC GCGGCGCGGC GCAGATCGGC ACCACGATCA GCGGGCGGCC GGTGCATGCG
GCCACGAATG CGGCCGCCGA TCAGGCCGCC GCCGCGCAGT TCGACGCGAT CTGGCATCGC
GCGTTTCTCG ACCCGCTGTA CGGCAAGGGC TATCCGGCCG AGCTGCAGGC GGCGCTGGCG
CCGCTCGTCC AGCCGGGCGA CATGGCGACG ATCGCGGCGA ACCCGGATTT TCTCGGCGTG
CAGTATTACA ACTGCTTCTA CGTGAAGGCC GGCGCCAACG GCACGGGCTT CGCGCTGGCC
GCCAGCCCGG CGAATGAAAC CCAGACGCTG GGATATCCGG TCGAACCGTA TGGGATGTCC
GAGATGCTGC TGCGCGTGCA CCGCGACTAC GGCGCGCCGC GCATCGTCGT CACCGAGACC
GGCTTCGCGA TCGCCGAGCC CGCGCCGAGC GGCGGCATCG TCGACGACGG CCCGCGTATC
GACTACCTCG CGAGCTACCT GAACGCCGCG CACGACGCGT ATCGGCAGGG CGTGCGCCTC
GGCGGGGTGT TCTACTGGGC CGGAATGGAT AGCTGGGAGT GGTCCAGCGG CTTCGCGAAG
AAATTCGGGC TGATCCACGT CGACCCGGCA ACGCAGCAAC GTTTCCCGAA ACGCAGCCTC
GCGTACTACT CGCGCTGCAT CGCCGGCAAT CGCGTCGCGT AG
|
|---|
| Protein sequence | MLGSGMLSAC GGDSIDSDAS ARFADDFVWG VATAAPQIES RDGRGRSNWD VFADQPGTIA
DGSTNARCIE FEKRYPGDLS LLANAGVQAF RFSTAWPRVQ PDGPGAASEA GLATYDRIVD
AMLERHLTPY LTLFHWDIPV WAGDFRDRDI AYRLADYAQQ VSRRLGDRVK HWMMLNEPNG
VALSSYAYGA SPPRAQSMGA MFAAIHHQNL AQGLMFQAVR SNVRGAAQIG TTISGRPVHA
ATNAAADQAA AAQFDAIWHR AFLDPLYGKG YPAELQAALA PLVQPGDMAT IAANPDFLGV
QYYNCFYVKA GANGTGFALA ASPANETQTL GYPVEPYGMS EMLLRVHRDY GAPRIVVTET
GFAIAEPAPS GGIVDDGPRI DYLASYLNAA HDAYRQGVRL GGVFYWAGMD SWEWSSGFAK
KFGLIHVDPA TQQRFPKRSL AYYSRCIAGN RVA
|
|---|
| |