| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1924 |
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| Symbol | |
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| ID | 6177163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 2141002 |
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| End bp | 2142942 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641681683 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001808622 |
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| Protein GI | 172060970 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.257028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCACCA AATTAACCGT CAAGAATCCG CGTCCGGCGT CGCCGACCCG CGCACCCGTC
CGCTCCGGCA GCCTCGTCGC TCGCAAGGCG GTGCGCCCCG CCGGGCCGCC CGCGGCCGAC
AAGCCGCCGC GCCCGAAGAA GGCCGCCGCG CCGGCAGCCG CCGGCGAACG CGCGTTCAAG
CCGCGCGGCG CGGAACGCCC GGGGGCTGAT CGTGCGCCGG CGAAGCGCGC ACCGCGTGAC
GGCGGTGCGG AGCGTGGCGA CGCGCGTCCC GCGCGTCCGT ATCGCAGCGC CGAAGGCCAG
CCCGATGCGC GGCCGCGCCG CGCGGGCGCC GAAGGCGGTG CACGCGCACC GTATCGCGAC
AAGGCGGAGG GCTACGGCGA GAAGCGCAGC TTCGGCGAAC GCCGTACGTC GACCGATCGC
CCGGCTCGCC GCAGCGATGA CGATGCGCGG CCGCGCCGCG CAGGTGCCGA AGGCGGCGCA
CGCGCGCCGT ATCGCGACAA GGCAACCGGC TACGGCGAAA AGCGCAGCTT CGGCGAACGC
AGTACATCGT CCGACCGCCC GGCTCGTCGC AGCGATGACG ATACGCGGCC GCGCCGTGCA
GGTGGCGAAG GCGGCGCACG CGCACCGTAT CGCGACAAGG CAACCAGCGA TGCACCGAAG
CGCAGCTTTG GCGAACGCCG TACGTCGTCC GACCGCCCGG CACGCCGCAG CGACGACGAT
ACGCGCCCGC GCCGTGCAGG CGCCGAAGGC GGCGCACGCG CGCCCTATCG TGACAAGACA
ACCGGCGATG CGCCGAAGCG CAGCTTCGAC GAACGCCGTA CGTCGTCCGA CCGCCCGGCT
CGCCGCAGCG ACGACGATAC ACGGCCGCGC CGCGCAGGCG CCGAAGGCGG CGCACGCGCG
CCCTATCGTG ACAAGGCAAT CGGCGACGCA CCGAAGCGCA GCTTCGGCGA ACGCCGTACG
TCAACCGACC GCCCGGCTCG CCGCAGCGAC GACGATGCAC GGCCGCGCCG CGCAGGCGCC
GAAGGCGGCG CACGCGCACC GTATCGCGAC AAGGCACCCG GCTACGGCGA AAAGCGCAGC
TACGGCGAGC GCGGCAACAC CGAGCGCCGC TCGACGGCCA CCGCGCCGAA GACCGCACAA
CCGGTCAAGC GCCGCGCCCC CGACATCGAT CACGGCGACG AAACCGGCCT GATGCGCCTG
TCGAAGCGCA TGTCCGAGCT CGGCCTGTGC TCGCGCCGCG AAGCCGACGA ATGGATCGAA
AAGGGCTGGG TGCTCGTCGA CGGCGAACGC ATCGACACGC TCGGCACCAA GGTCCGTCCC
GACCAGAAGA TCGAGATCGA CGAACGCGCG AGCGCCGCGC AGGCCGCACA GGTGACGATC
CTGCTGCACA AGCCGGTCGG CTACGTGTCC GGTCAGGCGG AAGACGGCTA CGAACCCGCG
TCGGTGCTGA TCACGCGCGC GAACCAGTGG AGCGGCGACC GCTCGCCGCT GCGCTTCTCG
CCGCAGCATC TGCACGCGCT CGCACCGGCC GGCCGGCTCG ACATCGATTC GACCGGCATG
CTCGTGCTGA CGCAGAACGG CCGGATCGCG AAGCAGCTGA TCGGCGAGCA GTCGGACATC
GACAAGGAGT ACCTGGTGCG CGTGCGCTTC GGCGAACGGC TGCTCGACAT CGACCAGCAC
TTCCCCGCCG AATCGCTGGC GAAACTGCGC CACGGCCTCG AACTCGACGG TGTCGCACTG
AAACCCGCGA TGGTGAGCTG GCAGAACGGC GAACAGCTGC GGTTCGTGCT GCGTGAAGGC
AAGAAGCGCC AGATCCGCCG GATGTGCGAA CTGGTCGGTC TCGAAGTGAT CGGCCTGAAG
CGTGTGCGCA TGGGCCGCGT GATGCTCGGC GCGCTGCCGC AAGGGCAATG GCGCTACCTG
TCGCCCGACG AGTCGTTCTG A
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| Protein sequence | MRTKLTVKNP RPASPTRAPV RSGSLVARKA VRPAGPPAAD KPPRPKKAAA PAAAGERAFK
PRGAERPGAD RAPAKRAPRD GGAERGDARP ARPYRSAEGQ PDARPRRAGA EGGARAPYRD
KAEGYGEKRS FGERRTSTDR PARRSDDDAR PRRAGAEGGA RAPYRDKATG YGEKRSFGER
STSSDRPARR SDDDTRPRRA GGEGGARAPY RDKATSDAPK RSFGERRTSS DRPARRSDDD
TRPRRAGAEG GARAPYRDKT TGDAPKRSFD ERRTSSDRPA RRSDDDTRPR RAGAEGGARA
PYRDKAIGDA PKRSFGERRT STDRPARRSD DDARPRRAGA EGGARAPYRD KAPGYGEKRS
YGERGNTERR STATAPKTAQ PVKRRAPDID HGDETGLMRL SKRMSELGLC SRREADEWIE
KGWVLVDGER IDTLGTKVRP DQKIEIDERA SAAQAAQVTI LLHKPVGYVS GQAEDGYEPA
SVLITRANQW SGDRSPLRFS PQHLHALAPA GRLDIDSTGM LVLTQNGRIA KQLIGEQSDI
DKEYLVRVRF GERLLDIDQH FPAESLAKLR HGLELDGVAL KPAMVSWQNG EQLRFVLREG
KKRQIRRMCE LVGLEVIGLK RVRMGRVMLG ALPQGQWRYL SPDESF
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