Gene BamMC406_1516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1516 
Symbol 
ID6176968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1677317 
End bp1677964 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content69% 
IMG OID641681277 
ProductLexA repressor 
Protein accessionYP_001808219 
Protein GI172060567 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.984097 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAC TCACCGCACG TCAGCAGCAA GTGTTCGACT TGATCCGCCG GGCGATCGAG 
CGCTCCGGTT TCCCCCCCAC GCGCGCCGAG ATCGCGGCCG AGCTGGGTTT CAGCTCGCCG
AACGCGGCCG AGGAACACCT CCGGGCGCTC GCGCGCAAAG GCGTGATCGA GCTGGCCGCC
GGCGCGTCGC GCGGCATTCG CCTGCTCGGC ATCGACGATG CGCCGCACCA GTTCACGCTG
CCGCACGCCG GCCTGATGCA GCTGTCGCTG CCGCTCGTCG GCCGGGTGGC GGCCGGTAGC
CCGATCCTCG CGCAAGAGCA CATCTCGCAG CATTACGCAT GCGATCCCGC GCTGTTCACG
AGCAAGCCCG ACTACCTGCT GAAGGTGCGC GGCCTGTCGA TGCGCGACGC CGGCATTCTC
GACGGCGACC TCCTCGCCGT GCAGAAGCGC ACGGAAGCGA AGGACGGCCA GATCATCGTC
GCGCGCCTGG GCGACGACGT CACGGTCAAG CGCCTGATGC GCCGGCCCGG CGGCCTCGAG
CTGATCGCGG AGAACCCGGA TTACGAAAAC ATCTTCGTCA AGGCCGGCAG CGCGGAATTC
GCGCTGGAAG GCATCGCCGT CGGGCTGATC CGCTCGGGCG AACTCTGA
 
Protein sequence
MTKLTARQQQ VFDLIRRAIE RSGFPPTRAE IAAELGFSSP NAAEEHLRAL ARKGVIELAA 
GASRGIRLLG IDDAPHQFTL PHAGLMQLSL PLVGRVAAGS PILAQEHISQ HYACDPALFT
SKPDYLLKVR GLSMRDAGIL DGDLLAVQKR TEAKDGQIIV ARLGDDVTVK RLMRRPGGLE
LIAENPDYEN IFVKAGSAEF ALEGIAVGLI RSGEL