| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1516 |
|---|
| Symbol | |
|---|
| ID | 6176968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1677317 |
|---|
| End bp | 1677964 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641681277 |
|---|
| Product | LexA repressor |
|---|
| Protein accession | YP_001808219 |
|---|
| Protein GI | 172060567 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.984097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC TCACCGCACG TCAGCAGCAA GTGTTCGACT TGATCCGCCG GGCGATCGAG
CGCTCCGGTT TCCCCCCCAC GCGCGCCGAG ATCGCGGCCG AGCTGGGTTT CAGCTCGCCG
AACGCGGCCG AGGAACACCT CCGGGCGCTC GCGCGCAAAG GCGTGATCGA GCTGGCCGCC
GGCGCGTCGC GCGGCATTCG CCTGCTCGGC ATCGACGATG CGCCGCACCA GTTCACGCTG
CCGCACGCCG GCCTGATGCA GCTGTCGCTG CCGCTCGTCG GCCGGGTGGC GGCCGGTAGC
CCGATCCTCG CGCAAGAGCA CATCTCGCAG CATTACGCAT GCGATCCCGC GCTGTTCACG
AGCAAGCCCG ACTACCTGCT GAAGGTGCGC GGCCTGTCGA TGCGCGACGC CGGCATTCTC
GACGGCGACC TCCTCGCCGT GCAGAAGCGC ACGGAAGCGA AGGACGGCCA GATCATCGTC
GCGCGCCTGG GCGACGACGT CACGGTCAAG CGCCTGATGC GCCGGCCCGG CGGCCTCGAG
CTGATCGCGG AGAACCCGGA TTACGAAAAC ATCTTCGTCA AGGCCGGCAG CGCGGAATTC
GCGCTGGAAG GCATCGCCGT CGGGCTGATC CGCTCGGGCG AACTCTGA
|
|---|
| Protein sequence | MTKLTARQQQ VFDLIRRAIE RSGFPPTRAE IAAELGFSSP NAAEEHLRAL ARKGVIELAA
GASRGIRLLG IDDAPHQFTL PHAGLMQLSL PLVGRVAAGS PILAQEHISQ HYACDPALFT
SKPDYLLKVR GLSMRDAGIL DGDLLAVQKR TEAKDGQIIV ARLGDDVTVK RLMRRPGGLE
LIAENPDYEN IFVKAGSAEF ALEGIAVGLI RSGEL
|
|---|
| |