| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1289 |
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| Symbol | |
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| ID | 6177953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 1424959 |
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| End bp | 1426770 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641681046 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001807995 |
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| Protein GI | 172060343 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0391299 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCATC TGCTTCCGCA CTACGAACGA GAGCTTGGCC TGCTGCGCGC ATCAATTGCC
TCCTTCTCGG CGCGCTATCC CAAAATCGCC GTCCGCCTCG GGATCAACGG AGACCGCTCT
GAAGATCCGC ATATCGAGCG AATGCTGCAG TCATTCGCTC TTCTTGCCGC GAATATCGGC
ACTCGGCTCA GTGACGAGTA TCCCGAATTC ACCACGTCGC TCGCAGGCAT GCTGTGCCCG
CAATACCTGC GACCGGTGCC GGCATGTACG ATTGCCCGGT TCGACATCGG CGACGTGTTC
GACAAGCTGA CCGAACCGTC GTCGATTCGC CGCAACACCG AACTCTCGAG CAAAGCGGAG
GACTGCCGCT TCCGTACTGT CTACGACGTT ACGCTTGCGC CCATACGCAT CGAGCACGCG
CGGTACGGGC CGGCAACCAG CGTTCCGTCT TATGCGGTAT TGCCACCGAG CACATCCGGC
CTCCTCTCGA TCACTTTCGC GGTTACGCGG CCTGATTTTC GTATCGCGTC CATTCCGAGT
CCGCTGCGTG TCCATATCCA CGGTGCGGAC GAAGTCGTCG CCACGATCCT CGATTCGATG
ACAATGCGGA CCGCGGCAGC GTTCGTCGAA GACGCGCAAC AGCGGTGGAC CGCATTGCAC
GCTTCGCCGC TTGCACCGGT AGGCCACGAC GACACCGAGC GGCTGATCGA CGAAGACGAC
GGAGCCCCGG CCCTGCGATT GCTCGGCGAA TACTTCGCAT ACTCGAAGAA GTTCGATTTC
ATTGACATCG ATCTCGGTGC GCTGACCGAT GCAGCAGGCC CGGATCACAC ACTGACGCTG
CACCTCGCGA TCCGCGGCGT ACATCCGGAC TCGCGGGAAG CCCAGCGGCT GGGCGCGTTG
TCGGCAGAAA ACCTGAAGCT CTTCTGCACG CCGATCGTCA ATCTGTTCCG GCTCACGTCG
GTGCCACTCA AGCGAGACTC GCTGACCGGC ACGTATCCGG TGCAGCCGCA GAAAACCGAT
GCAGCGCAAG TTGCGATCTG GTCGGTCGAT ACGGTACGCG CCACGACTGG CGTGTCGAGG
GCGGCTGTCA TTCCGCCGTT CACGTCGCTC ATGCATGGCG GTGTCAGCGG GCCGACCGGC
CCCTACTGGA TTTCCGTCCA ACGCGCAGCG ACGACTTCTT CGGGAAAAGC CGAGGCTGCG
ATCAGTCTGG TCGGACTCGA TGGCCGCCCC GCGTCCGACA CCGGGATCGA GCAGATCACC
GCGAACCTGA CGTGCACGAA CGGCGATCTC CCCCGGACGA TACGGGCGAG TGCGCCCAAT
GGCGATCTCG TCAACGAACA AGGCGCAATC GTGTCGCGCA TCGACATGCT CGACGTGCCC
ACCGCTGTTG CCCGTCTACC GCAAGAAGGC GACGCCGTAT GGCGGCTGAT CGCGCAACTC
GCGCCGCATT CGATCGAACT GACCCGCTCG GGGCTTGCGG AATTGAAACG TCTGCTCCGC
CAATTTGCGG TGCAGTCGGG CACGCACGCG AACCTGATCG ATGGATTGAC GAACCTGGGT
CATCGCGTCA GGCAACTCTG GCTGTCGGGA GAGCCGATGC CGAGCTTTGT ACGCGGCCTG
GAGGTGACGC TGACCGTGGA CGAACAGGCG TTCGCGGCAA CGAGTCTGAA TGCGTTCGTC
GGTGTGATGG AGCGTTTTTT CACTGCACAT ATGTCCGCAA CGAATTTCGT GCAGTTGGTC
GTCATGTCCG CCAACAACGG CCGGGAAATT TGGCGTTGTG CGCCACGACC GGGAGCGACG
CCGCTCGTCT GA
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| Protein sequence | MDHLLPHYER ELGLLRASIA SFSARYPKIA VRLGINGDRS EDPHIERMLQ SFALLAANIG
TRLSDEYPEF TTSLAGMLCP QYLRPVPACT IARFDIGDVF DKLTEPSSIR RNTELSSKAE
DCRFRTVYDV TLAPIRIEHA RYGPATSVPS YAVLPPSTSG LLSITFAVTR PDFRIASIPS
PLRVHIHGAD EVVATILDSM TMRTAAAFVE DAQQRWTALH ASPLAPVGHD DTERLIDEDD
GAPALRLLGE YFAYSKKFDF IDIDLGALTD AAGPDHTLTL HLAIRGVHPD SREAQRLGAL
SAENLKLFCT PIVNLFRLTS VPLKRDSLTG TYPVQPQKTD AAQVAIWSVD TVRATTGVSR
AAVIPPFTSL MHGGVSGPTG PYWISVQRAA TTSSGKAEAA ISLVGLDGRP ASDTGIEQIT
ANLTCTNGDL PRTIRASAPN GDLVNEQGAI VSRIDMLDVP TAVARLPQEG DAVWRLIAQL
APHSIELTRS GLAELKRLLR QFAVQSGTHA NLIDGLTNLG HRVRQLWLSG EPMPSFVRGL
EVTLTVDEQA FAATSLNAFV GVMERFFTAH MSATNFVQLV VMSANNGREI WRCAPRPGAT
PLV
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