| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1099 |
|---|
| Symbol | |
|---|
| ID | 6177859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1210796 |
|---|
| End bp | 1213117 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641680855 |
|---|
| Product | exodeoxyribonuclease V, alpha subunit |
|---|
| Protein accession | YP_001807806 |
|---|
| Protein GI | 172060154 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.774754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGT CCGACGATAC GCTCGAATTC ACCGGCGGCC TCGTCGCGCG CCTGCCCGAG
CCCGCGGATT TCGGCATCGC GCTCGCGGAA GGATTCGCGC GCCGCATGGG TGACCTGTCG
CGCCGCGCGG GTGCGCCGGC CGTGGCCGCG CGCTGGGCGG CGCGTGCCGC GTTCGCGGCG
AGCCGTGCGA CCGCGGGCGG CCACGTGTGC GTGTCGCTCG GCGCGCTCGC GCAGCGCTAC
GAGGAGCCGG TCGACGACGT GCGCGCGGCG CTTGCCGCGA GCGGCGTGGT GGCGTTCGGT
ACGCTCGCGC GCGGCGACGA GCGGCCGCTG ATCGTCGACC GGCTCGACCA TCTGTATCTG
TCGCGCTATT TCGACTACGA ACGGCGGCTT GCCGATGCGC TCGTCGCGCA GGCCGGCGTC
GCCGCACCGG GCGACGCGCT GTCGCCCGAG CGCTTGCGCG ACAGTCTTGC GCGTTACTTC
GGGCCCGCGA CCGGCGAGGT GGACTGGCAG CGCGTCGCCG CGATCGTTGC GCTGACCGGG
CGTGTGACGA TCGTCAGCGG CGGCCCCGGC ACCGGCAAGA CGACGACCGT CGTCGGCGTG
CTGGCTTGTC TGCTCGACGC GCATCCGGGG CTGCGCATCG CGCTGGCGGC GCCGACCGGC
AAGGCCGCGC AGCGGATGCA GGAAGCGCTG CACGCGCGGG CGGGCGATCT GCCGCCGGAA
CTTGCCGCGC GCCTGCCCGA CACGTCGTAC ACGCTGCATC GCCTGCTGGG CGGCGGCGGC
GCGGCGGGCT TCCGCCATCA CCGCGACAAT CCGTTGCCGT ATGACCTGAT CGTCGTCGAC
GAGGCGTCGA TGATCGACGT CGCGCTCGCC GCGCATCTGC TCGATGCGCT CGCGCCCGGC
GCACGGCTCG TGCTGCTGGG CGACAAGGAT CAGCTCGCCG CGGTCGAGGC CGGCGCCGTG
TTCGCCGAGC TCAGCGCACG GCCGACGTTT ACCGCCGCGG CACGCACGCG CATCGCGGGT
GCACTCGGGA TCGACGAAGC GGCTTTCGTC GCGGCGTTGC CGGTGCCCGA CGGCGAGGCG
GCGGCGGTTG CGGCGACCAC TCAAGCTCCG GCCCCAGCGC CGGCTCCGGC ATCCGCGCCG
GTGTCGACGA GCGCTGCGCG CAGGCCGCCG GCGCGGCGGA ACGTGGATAC GCGCCAGGCG
TCGCTGTTCG ACGACGATCC GCAGGACGAA GCGATGTCCG CTGCCGATGT CGCCGCGCCG
CCGGCCGCTT CGTTGTCACC TGCGGCGGCC GCGCCGACCG ACATCGATAG TGTTGGCGCT
TCCGCCGATC CAGCATGGAT CGAGGCCGAC GAACTCGCGT GGCTCGACGC GATCGAGCTC
GCGCCATTCG ATCCGGCCGA TGCAGCCGAT GCGGCAAATG CGTCGCTTGC ATCCACCGCC
GCAACGCAAG CCGACGACCC CGCCGCAGCG TCACCCGCAC CCGCACCGCT TGCAGACTGC
GTCGTATGGC TCGAACGCAA TTACCGTTTC GGTCTCGATT CGCCGATCGG CCGTCTGTCG
CTGGCGATCC GCCGCGGCGA CGTGCAGGCC GCGCTCGATG CGTTGCCGGC GGACGATGCC
GCTGCCGCGT CGTTTCATGA CGACGCGGGC GATACGCTTG CGGCGTCGAC GGTCGAGCGG
CTCGCGCGCC GGTTCGCCGC GTACCTCGAC GCATTGCGTA CCGCGTTGTC CGAGCCGGTG
CCCGATCCGT TGCCGTTGTT CGATGCACTC AATCGCTTCC GGATCCTGTG CGCGACGCGC
ACCGGATCGC GCGGCGCCGA GCACGTCAAT GCGCTGGTGG CCACGCACGT GCGACAGGCC
GCGCGCGTGC CGCTCGCGGT CGGTGCACAC TGGTTCACCG GGCGCCCGAT CATGGTCACG
CGTAACGACT ATGCACTCGG GCTGTTCAAC GGCGACATCG GCATCGCATT GCCGGACGCG
CACGGCGTGC TGCGCGTGTG GTTCCGGCGC GCGGACGGTA CTGCGCGCGC CGTGTCGCCC
GCCGCGCTGC CGCCGCACGA AACGGCGTTC GCGCTGACGG TCCACAAGTC GCAGGGCTCC
GAATTCGACG AGGCCGCGCT CGTGCTGCCG GCGTCGTTCG GGCGCGTGCT CACGCGCGAA
CTCGTCTATA CGGCCGTCAC GCGCGCACGC ACGCGCGTGC AGGTGATCGG TCCGCGGCGC
GTGCTCGCGC AGGCAGTCGC GACGCGCACG CAACGCGATT CGGGCCTTGC GGCCCGCGTC
GACGAGGCGC TCGCGCGGCG TCGCAAGGAG CCGTCGCGAT GA
|
|---|
| Protein sequence | MNASDDTLEF TGGLVARLPE PADFGIALAE GFARRMGDLS RRAGAPAVAA RWAARAAFAA
SRATAGGHVC VSLGALAQRY EEPVDDVRAA LAASGVVAFG TLARGDERPL IVDRLDHLYL
SRYFDYERRL ADALVAQAGV AAPGDALSPE RLRDSLARYF GPATGEVDWQ RVAAIVALTG
RVTIVSGGPG TGKTTTVVGV LACLLDAHPG LRIALAAPTG KAAQRMQEAL HARAGDLPPE
LAARLPDTSY TLHRLLGGGG AAGFRHHRDN PLPYDLIVVD EASMIDVALA AHLLDALAPG
ARLVLLGDKD QLAAVEAGAV FAELSARPTF TAAARTRIAG ALGIDEAAFV AALPVPDGEA
AAVAATTQAP APAPAPASAP VSTSAARRPP ARRNVDTRQA SLFDDDPQDE AMSAADVAAP
PAASLSPAAA APTDIDSVGA SADPAWIEAD ELAWLDAIEL APFDPADAAD AANASLASTA
ATQADDPAAA SPAPAPLADC VVWLERNYRF GLDSPIGRLS LAIRRGDVQA ALDALPADDA
AAASFHDDAG DTLAASTVER LARRFAAYLD ALRTALSEPV PDPLPLFDAL NRFRILCATR
TGSRGAEHVN ALVATHVRQA ARVPLAVGAH WFTGRPIMVT RNDYALGLFN GDIGIALPDA
HGVLRVWFRR ADGTARAVSP AALPPHETAF ALTVHKSQGS EFDEAALVLP ASFGRVLTRE
LVYTAVTRAR TRVQVIGPRR VLAQAVATRT QRDSGLAARV DEALARRRKE PSR
|
|---|
| |