| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1088 |
|---|
| Symbol | |
|---|
| ID | 6178993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1193501 |
|---|
| End bp | 1193956 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641680844 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_001807795 |
|---|
| Protein GI | 172060143 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.683076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCA GCAGCCGGTT CGCGTTTGCC GTTCACGTGC TTGCCTTGCT GTCGATGCAG
GAAGGCGCGC CGCTGTCGTC CGACATCATC GCGGGCAGCG TGAACACGAA TCCGGCGCTG
ATTCGCCGTC TGCTGTCGAT GCTGGCGGCC GCCGGGCTGA CCACGTCGCA GCTCGGCGCG
GGCGGCGGCG CGCTGCTGGC GCGCGAGCCG GGCGAGATCA CGCTGCTCGA CGTGTATCGC
GCGGTCGACG ATGCGCAGTT GTTCGCACTG CATCGCGAGG CGCCGAATCC CGCGTGTCTC
GTCGGGCGGC ACATCCAGGG CGTGCTGATC GACTACATCG GCGACGCGCA GCGCGCGATG
GAAGCATCGC TTGCCACGCG CACGCTCGCG GATGTCACGG CCGACGTGCT CGAATCGGAG
CACCGCAGCC GGCCGGCGGG AAGTGCCGGC GGGTGA
|
|---|
| Protein sequence | MNTSSRFAFA VHVLALLSMQ EGAPLSSDII AGSVNTNPAL IRRLLSMLAA AGLTTSQLGA
GGGALLAREP GEITLLDVYR AVDDAQLFAL HREAPNPACL VGRHIQGVLI DYIGDAQRAM
EASLATRTLA DVTADVLESE HRSRPAGSAG G
|
|---|
| |