Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0971 |
Symbol | |
ID | 6176174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 1062407 |
End bp | 1063795 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641680721 |
Product | MATE efflux family protein |
Protein accession | YP_001807678 |
Protein GI | 172060026 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.500099 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCATT CCGGTCTCAC GCGGACGGCC GCCGCGCCGC CATCCCTGTC CAGTCATGCC GCCGATACCG CGCGCCTCGC CGCGCCGCTC GCGATCGCAC AGCTCTCGCA GATGGCGATG AGCGTCACCG ACACGGTGCT GCTCGGCTCG CTCGGCCCCG ATTCGCTCGC GGCGGGCGGC CTCGGCGCGA ACTACTTCTT CGTCATCGTG ACGGTGCTGC AGGGCGTGCT GTCATCGGTC AGCGTGAGCG TCGCGCATGC GCGCGGCGCG CAGGCGGAAC ACCGCGTGCC GCACATCTAC TGGACCGGCT TCGTACTGTC GTTGCTGCTC GCGATTCCGG CGATCGTCGC GCTGTCGTTG TCGGAGCCGA TCCTGCTGAT GTTCCACGAG CCCCCGACGC TCGCGCATCA CGTCGGCGAA TACACCGGCA TCCTGCGGTT CGCGGCGCTC GGCAGCCTGA TCGGCGTCGG GCTGATGCGC GCCTTCCTTC CCGCGATCGG CGCCGCGCGG CGGCTGCTGT GGGTGTCGAT CGGCGGTGTC GGCGTCAACG CCGTGCTGAA CTACGGGCTG ATCCACGGTG CATTCGGCTT GCCGCGGTTC GGCTTCCTCG GCTCCGCGGT CGCGACGACC ATCACGATCT GGCTCACCGC GCTCGCGCTG ATCTGGCTGC TGCACGGCCG CGAGCGGTTC CGCCATTTCG TGACGGCCGC CCGCCCGAAA CTGCCCATGA TGGGCGAGCT GATCGGCATC GGCTGGCCGG TGGCGATCAC GTATGGGGTC GAATCGACGC TGTTTCTCGC GACGGGCCTG ACCGTCGGCG TGCTCGGCGC GACGTCGCTC GCCGCGCACC AGATCGCGCT GAACGTCGCA TCGCTGGCGT TCATGGTGCC GCTCGCGATC GGGCAGGCCG CGAACGTACG GGTCGGCTAC TGGGTCGGCG CCGGCGAGCC GGTCGCCGCG CGGCACGCGG GCTTCGTCGC GCTCGGCCTC GGCGTCGCAT TCATGTCGCT GTCGGGACTC GTGCTGATCG TCGCGCCCCA TGCGATCGTC GGCCTGTACC TGCACCTCGA CGACCCGGCC AACGCGGCGA CCGTGTCGCT TGCGGCGTCG CTGCTCGGCA TCGCCGCGGT GTTCCAGATC GTGGACGGGA TGCAGACGGT CGCGTCGGGC GCGCTGCGCG GGCTGCGGGA TACGCGCATC CCGATGCTCG CGGCCACCCT CGGCTACTGG GGCATCGGCT TCCCGACCGG TTACTGGTTG GCGTTCCACG CGGGCCTCGG CGCACGCGGC CTGTGGTGGG GGCTCGCGGC CGGCCTCGCC AGCGTCGCCG TGCTGATGGC CTGTCGCTTT CACATGAAGA CCGCGTCGCT CATCGCGTCG GCGCGCTGA
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Protein sequence | MSHSGLTRTA AAPPSLSSHA ADTARLAAPL AIAQLSQMAM SVTDTVLLGS LGPDSLAAGG LGANYFFVIV TVLQGVLSSV SVSVAHARGA QAEHRVPHIY WTGFVLSLLL AIPAIVALSL SEPILLMFHE PPTLAHHVGE YTGILRFAAL GSLIGVGLMR AFLPAIGAAR RLLWVSIGGV GVNAVLNYGL IHGAFGLPRF GFLGSAVATT ITIWLTALAL IWLLHGRERF RHFVTAARPK LPMMGELIGI GWPVAITYGV ESTLFLATGL TVGVLGATSL AAHQIALNVA SLAFMVPLAI GQAANVRVGY WVGAGEPVAA RHAGFVALGL GVAFMSLSGL VLIVAPHAIV GLYLHLDDPA NAATVSLAAS LLGIAAVFQI VDGMQTVASG ALRGLRDTRI PMLAATLGYW GIGFPTGYWL AFHAGLGARG LWWGLAAGLA SVAVLMACRF HMKTASLIAS AR
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