| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0727 |
|---|
| Symbol | |
|---|
| ID | 6178947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 811924 |
|---|
| End bp | 813138 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641680475 |
|---|
| Product | major facilitator superfamily transporter |
|---|
| Protein accession | YP_001807439 |
|---|
| Protein GI | 172059787 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.606213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACCG ATTCCGCCAC ACCGCCGCGC AGCGGGTTCG CCGTCACGCT GCAAATCGTG
TCCGTCGTCA GCTTCACGTT CATCTGCTAC CTGACCATCG GCCTGCCGCT CGCCGTGCTG
CCGGGCTTCG TCCACGACGA TCTCGGCTTT TCCGCGATCG TCGCGGGCGG TGCGATCAGC
GTCCAGTATT TCGCGACGCT CGCATCGCGC CCGCTCGCGG GGCGCTTCGC CGATACGCTC
GGGCCGAAGC AAACGGTGCT GCGCGGGCTG ATCGGCTGCG GCGTGTCGGG CGTGCTGCTG
CTCGTCGCGC TGCTGCTGGC CCACTGGCCG GTCGCGAGCC TCGTGCTGCT GGTCGCGAGC
CGGCTCGTGC TGGGTGTCGG CGAAAGCCTG TGCGGCACGG GGGCGATCCT GTGGGGCATC
GGCCGGGTCG GCGTCGCGCA CAATGCGAAG GTGATCTCGT GGAACGGCAT CGCGACCTAC
GGCGCGCTCG CGCTCGGCGC GCCGGTCGGC GTGGCGATCG CGCATACGCT GAACCCGGCG
CTGATCGGCG TGCTCGTGAT CGCGCTCGCC GCGATCGGCT TCTACCTCGC ACGCCTGATC
GATGCCGTGC CGCTCGTGCA TGGCGAGCGG ATGTCGTATG CGAGCGTATT CACCCGCGTG
CTGCCGCACG GCCTCGGCCT CGCGCTCGGC TCGGCCGGTT TCGGCTCGAT CGCGACCTTC
GTCACGCTGT ACTACGCGGC GCGCCACTGG CCGAACGCCG CGTTGTCGCT GACGGTGTTC
GGCACGCTGT TCATCGGCGC GCGCCTGCTG TTCGCGAACA CGATCAAGAC CTACGGCGGC
TTCCGCGTCG CGATCGTGTC GTTCGCGTTC GAATGCTCGG GTCTCCTGCT GCTGTGGCTC
GCGCCCGTGC CGCACGTCGC GCTCGCCGGC GCCGCGCTGA CCGGCTTCGG CTTCGCGCTG
ATCTTCCCGG CGCTCGGCGT CGAGGCCGTC GCGCTCGTGC CGCCCGCGAG CCGCGGCGCG
GCGCTGTCCG CGTACTCGGT GTTCCTCGAC CTGTCGCTCG GCATTACCGG CCCGCTCGCC
GGCTATATCG CGGGCGCGTT CGGCTATCCG CAGGTGTTCC TGTTCGCGGC CGTGGCCGCG
GCGGCGGGTG TCGCGCTGTC GATGGTGCTG TATCAGCGGC AGGCGCGCGT CGCGGGGAGC
GGCGCGGCGG CGTGA
|
|---|
| Protein sequence | MSTDSATPPR SGFAVTLQIV SVVSFTFICY LTIGLPLAVL PGFVHDDLGF SAIVAGGAIS
VQYFATLASR PLAGRFADTL GPKQTVLRGL IGCGVSGVLL LVALLLAHWP VASLVLLVAS
RLVLGVGESL CGTGAILWGI GRVGVAHNAK VISWNGIATY GALALGAPVG VAIAHTLNPA
LIGVLVIALA AIGFYLARLI DAVPLVHGER MSYASVFTRV LPHGLGLALG SAGFGSIATF
VTLYYAARHW PNAALSLTVF GTLFIGARLL FANTIKTYGG FRVAIVSFAF ECSGLLLLWL
APVPHVALAG AALTGFGFAL IFPALGVEAV ALVPPASRGA ALSAYSVFLD LSLGITGPLA
GYIAGAFGYP QVFLFAAVAA AAGVALSMVL YQRQARVAGS GAAA
|
|---|
| |