| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0166 |
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| Symbol | |
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| ID | 6176653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 200311 |
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| End bp | 202575 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641679901 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001806883 |
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| Protein GI | 172059231 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.268335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGGCG CTGTCGTGGA ACGGTTGAAC GCGGCGTTCG TGCACCATCA GGCCGGGCGC
TTCGACGACG CTCGCGTGCT GTACGAGGCG ATCCGGCGCG ACGAGCCGGA TCAGCCGGAT
GCGACGCACT TCCTCGGGCT GCTCGCGTGC CAGCTCGGCC AGTTTCCGGC CGGCCTCGCG
CTGATGGAGC GCGCGATCGC GCTGCGCGCC GATCCCGTCT ACCTGAACAA CTTCGGCAAC
ATGCTGCGCG CGCACGGTCG GCTCGACGAT GCGATCGGCG CGTACCGGCG TGCGATCGCG
CTCGCGCCCG ACTATGCGGA GGCGCACAGC AACCTCGGCA ACGCGTTGCG CGACGCGGGC
GACGCGGATG CCGCGATGCT GAGCTGCGCG CAGGCGCTCG CGCTGCGACC CGATTACGCG
CCGGCGTTCA ACAACCTCGG TAACGCACTG CAGGACAAGG GCGAACTCGA CGCCGCGGCG
CGCGCGTACG AGAAGGCGAT CGCGCTCGAT CCCGGCTACG CGCAGGCCCG CTTCAACCAG
GGCAACGTAT TGCGCGCGCA GCGCCGGCCC GACGAGGCGA TCGCGAGCTA CCGCGAAGCG
ATCGCGCTGC AACCGGATCT GCATGCCGCG CATCACGCGC TCGGCATGCT GCTGTTCGAG
CGCGACGATC TCGAGGCCGC GGTCGCGAGC CTCACCCGTG CGGCGGAATC GGGCGAAGCG
GACTGCCTTT TCCATCTCGC GGCCGCGCTC GAACGTGCGG GCGATCTCGA CGGCACGGTG
GCGAGCCTGC GGCGCGCGCT GGTGGCGGCA CCCGATCGCG CGGACCTGCA TCACCATCTC
GCGCAGACGC TGGTGCGGCA TGGCAAGCGG CGTGAAGCGC TCGACAGCTG CCGGATCGCG
CTGTCGCTGC CGAATCCGAC CGCGCAGATG CATGCGGTGA TGGGGGATAT CCTCTGCGCG
ATGTGGCACC TCGATGCGGG GCTCGCGAGC TACGATCGCG CGCTCGAAAT CGATCCTGCG
TTCCGCAACG CACACTCGGG CCGCATGTTC CACGCGGCCG GCACCGACCG GCTGTCGCCC
GCGCAACTGC TCGAGCGCGC GCGTGAATTC GGCACGCAGA TGGCCGCGCA GGCGTCGCCG
CGTACGCATG CGCCGCGGCC GGCCGCCGGG CGCGTGTTGC GTGTCGGGTT CGTGTCCGGC
GATCTGAAGT CCCATCCGGT CGCGGTATTC CTGCTGAGCG TCGTCGCGGC GCTCGATGCG
TCGCGCGTCG AGGCGGTGGC CTACGCGACG CAGTCGGTGG AGGACGATAC GACCGCGGCG
CTCAAGCGCC ATTTCGCGCT GTGGCGCGAC ATCACCGCGC TCGACGACCA CGCGGCCGCC
GACCTGATCG CCAACGACCG CATCGACGTG CTGGTCGACC TGAGCGGCCA TACCGCGTCG
AACCGGCTGC CGGTGTTCGC ATGGAAGCCG GCACCGGTGC AGGCGACCTG GCTCGGCTAT
TTCGCGACGA CCGGCATCGC CGCGATCGAC TACGTGATCG GCGATCGCCA CGTGCTGCCC
GACGACGAAG CCCATCACTT CGTCGAGCGG CCGTGGCGGC TGCCCGACAG CTATCTGTGC
TTCACGCCGC CCGCGCAGCC GCTCGACGTC GGGCCGCTGC CGGCCGAGCG CGAAGGTGTC
GTCACGTTCG GCTGCCTGAA CAATGCGAAC AAGATCGGCG ACGCCGTCGT CGCGCTGTGG
TCGCGCGTGC TGCATGCGGT ACCCGGTTCG CGCCTGCTGC TGAAGTCGGC GCAGCTCGAC
GAAGCCGCGC TGCGCACGAG CATCGCTGCG CGCTTCGCGG CACACGGTAT TCCGGTGGAG
CGCCTGCTGC TGCGCGGCGG ATCGAAGCGG CTCGCGCACA TCGCCACGTA CAACGACATC
GACATCGTGC TCGATCCGTT CCCGTATCCG GGCGGCACGA CGAGCATGGA AGGACTGTGG
ATGGGCGCGC CGTTCATCAC GCGACGCGGC GACCGCTTCC TGTCGCATAT CGGCGAAAGC
ATCCTGCATA CGCTCGGGAT GCCCGAATGG ATCGCGGACA ACGACGACGA CTATGTCGCG
AAGGCGGCCG CGTTCGCGCA GCGCCTGCCG CATGTCGCGG CCGTGCGGGC CGGGCTGCGC
GAGCGGCTGC TGCGCTCGCC GCTGTGCGAT GCGCCGCGCT TCGCCCGCCA TCTCGAAGCG
GGGTTCGCGC AGATGGTCGA CGCGGCGGTG GCCGCCGCGC GCTAG
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| Protein sequence | MTGAVVERLN AAFVHHQAGR FDDARVLYEA IRRDEPDQPD ATHFLGLLAC QLGQFPAGLA
LMERAIALRA DPVYLNNFGN MLRAHGRLDD AIGAYRRAIA LAPDYAEAHS NLGNALRDAG
DADAAMLSCA QALALRPDYA PAFNNLGNAL QDKGELDAAA RAYEKAIALD PGYAQARFNQ
GNVLRAQRRP DEAIASYREA IALQPDLHAA HHALGMLLFE RDDLEAAVAS LTRAAESGEA
DCLFHLAAAL ERAGDLDGTV ASLRRALVAA PDRADLHHHL AQTLVRHGKR REALDSCRIA
LSLPNPTAQM HAVMGDILCA MWHLDAGLAS YDRALEIDPA FRNAHSGRMF HAAGTDRLSP
AQLLERAREF GTQMAAQASP RTHAPRPAAG RVLRVGFVSG DLKSHPVAVF LLSVVAALDA
SRVEAVAYAT QSVEDDTTAA LKRHFALWRD ITALDDHAAA DLIANDRIDV LVDLSGHTAS
NRLPVFAWKP APVQATWLGY FATTGIAAID YVIGDRHVLP DDEAHHFVER PWRLPDSYLC
FTPPAQPLDV GPLPAEREGV VTFGCLNNAN KIGDAVVALW SRVLHAVPGS RLLLKSAQLD
EAALRTSIAA RFAAHGIPVE RLLLRGGSKR LAHIATYNDI DIVLDPFPYP GGTTSMEGLW
MGAPFITRRG DRFLSHIGES ILHTLGMPEW IADNDDDYVA KAAAFAQRLP HVAAVRAGLR
ERLLRSPLCD APRFARHLEA GFAQMVDAAV AAAR
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