Gene Pnec_1785 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1785 
Symbol 
ID6183883 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1559657 
End bp1559899 
Gene Length243 bp 
Protein Length80 aa 
Translation table11 
GC content40% 
IMG OID641672282 
Productprotein of unknown function DUF37 
Protein accessionYP_001798451 
Protein GI171464338 
COG category[S] Function unknown 
COG ID[COG0759] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00278] conserved hypothetical protein YidD 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0219614 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.264154 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCGTTT TAAATAATGC GGCAATTAAG TTGATAAAAA TTTATCAACT AGCGTTAAGC 
CCATATTTTG GAATGCACTG TAAATACGTA CCTAGTTGTT CGCAATATGC TTGTGAATGC
TTTAGTTATT ACGGATTTAT AAAAGGCTTT GGCCTAATGG TGTGGCGCAT TTTGCGTTGT
AACCCGTGGT CACGTGGCGG CTATGATCCA GCCGCAAAAG ATACAAAACA TCAACTTGAG
TGA
 
Protein sequence
MRVLNNAAIK LIKIYQLALS PYFGMHCKYV PSCSQYACEC FSYYGFIKGF GLMVWRILRC 
NPWSRGGYDP AAKDTKHQLE