| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1784 |
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| Symbol | |
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| ID | 6182961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1557977 |
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| End bp | 1559650 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641672281 |
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| Product | 60 kDa inner membrane insertion protein |
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| Protein accession | YP_001798450 |
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| Protein GI | 171464337 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.299868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 0.294876 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTTA AAAAAACAAT TTTTTGGGCA GCATTCTCGA TGTCGGGTCT TATGCTCTAC
AACAATTGGC AGGTTCATGA AGGCAAACCA TCGTTGTTCG GTGGCGCCCC CGCCAGCGCC
CCAGCAGTTG CCGACAAGGC TACTACTAAT AACAAGGTTG ATGTACCCAC ACAAATTTCT
GGAGCGCCTA GTGTTGCTGC GACCCCAATT ATCAATGGTG GCGCAATTGA AAGTGCTGAA
AAATTTACAC TACAAAATGA TGTGCTTGTA TTGGAGATAA GCGCAAGTGG CGCAAACGTT
ATTGATGCGA AGTTGTTGAA ATCCTTAACC GCTGAAAATA AACCGGTTGA ACTGTTTCAA
TACACGCCAA CACATAAATA TTTTGCTCGC TCTGGTTTGG TTTCTTTAAA CAATAATGAT
CTCCCAAACC ATACAAGCAC CTTCAAGCTA GTTCAATCTG GTAAGGATGG TTCGGGTAGG
CCATTTGCTG TTTTTGCAAG CGAGCGCAAT GGTGTAAGGC TTGAAAAAAC ATTCATCCTT
AATCCGGGCA GCTATGTGGT AGATGTTGGA CATCGTGTTA CGCAATCAAC AAGCAACCCA
AATCCGTTGG TTCTATATAC AGAAATTGTG CGCGACGCTT CGCAAGAACA AAAAATTGGC
CCATTTGGCG GCGCCTTTTC GGCCAACACC TTTACTGGAC CAGTGGCCTA CACAGACAAA
GAAAAATTCA ACAAACTGGA ATTCTCAGCA ATTGATAAAA ACAAAATTAC CATTCCAACT
TTAGTGGCTG CGGGCGAGCC CGCTTGGATT GCAATGGTTC AGCATTATTT TGCGAGTGCG
TGGATTCCGG GCGACAAAGT TGCGCGTGAT ATTTATACTG GAAGAATCGA CAATGGCTTG
TATCGAATTG GTATGCAAAC ACCGCTTGGC ATGGTTGGTC CTGGCTCTAC CGTTGTTGAA
AAGGCCAAGT TGTTTGTTGG TCCACAAGAA GAGCGTGTTT TGGAAACAAT CGCACCTGGC
TTTGAGTTGT TAAAGGACTA TGGCTACTTA ACCATTTTGG CCAAGCCAAT CTTCTGGCTT
TTGGACAACA TCCATTTTTA CGTTGGTAAC TGGGGCTGGT CAATCATCCT CTTAACTATT
TTGATTAAAT TGGTGTTCTT CCCCCTGTCG GCAGCAAGCT ATAAGTCAAT GGCTCGCATG
AAGGAAGTAC AGCCTCGTTT GGTTGCCATG AAAGAGCAGT ACAAGGGCGA ACCACAAAAA
CTCAATCAAG CCATGATGGA AATGTATCGC AAGGAAAAGA TCAATCCATT GGGTGGATGT
TTGCCGGTCG TTATTCAGAT TCCAGTATTT ATTTCCTTGT ACTGGGTTTT GTTGTCCTCG
GTCGAGACGC GTGGAGCACC ATGGATTTTG TGGATTCATG ATCTTTCAGT TCCTGATCCG
TACTACATCC TCCCAGTCAT CATGGCTGTC TCGATGTTTG TCCAAACAAA GTTGAACCCA
ACACCACCGG ACCCGATTCA AGCAAAAGTC ATGATGTACA TGCCGATTGT TTTCTCGGTA
ATGTTCTTCT TCTTCCCTGC TGGTTTGGTT TTGTACTGGG TCGTGAACAA CCTGTTATCG
ATTGCGCAGC AGTGGCAGAT TAACCAAATG TTTGGAAAAA AGCCTGCTAA GTAA
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| Protein sequence | MDFKKTIFWA AFSMSGLMLY NNWQVHEGKP SLFGGAPASA PAVADKATTN NKVDVPTQIS
GAPSVAATPI INGGAIESAE KFTLQNDVLV LEISASGANV IDAKLLKSLT AENKPVELFQ
YTPTHKYFAR SGLVSLNNND LPNHTSTFKL VQSGKDGSGR PFAVFASERN GVRLEKTFIL
NPGSYVVDVG HRVTQSTSNP NPLVLYTEIV RDASQEQKIG PFGGAFSANT FTGPVAYTDK
EKFNKLEFSA IDKNKITIPT LVAAGEPAWI AMVQHYFASA WIPGDKVARD IYTGRIDNGL
YRIGMQTPLG MVGPGSTVVE KAKLFVGPQE ERVLETIAPG FELLKDYGYL TILAKPIFWL
LDNIHFYVGN WGWSIILLTI LIKLVFFPLS AASYKSMARM KEVQPRLVAM KEQYKGEPQK
LNQAMMEMYR KEKINPLGGC LPVVIQIPVF ISLYWVLLSS VETRGAPWIL WIHDLSVPDP
YYILPVIMAV SMFVQTKLNP TPPDPIQAKV MMYMPIVFSV MFFFFPAGLV LYWVVNNLLS
IAQQWQINQM FGKKPAK
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